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  1. Bug Repository
  2. BUG-154

'Join graph' break the whole Data Access panel

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            To repeat:

            (1) Launch IGB 6.6
            (2) Load any two wig files
            (3) Go to Graph Adjuster to join any graph
            (4) Click Data Access panel, you will see the panel crashed.

            PS: This bug does not exist before. It's created after reimplemented Data Access panel.

              Attachments

              1. After Graph Join .png
                48 kB
                Nick Ren
              2. Before Graph Join .png
                75 kB
                Nick Ren
              3. wig_test_file1.wig
                0.6 kB
                Katharine Kubiak
              4. wig_test_file2.wig
                0.6 kB
                Katharine Kubiak

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-637 Graph >Join/Split bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  Hide
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                  imnick Nick Ren (Inactive) added a comment -

                  Fixed in version 8848

                  Show
                  imnick Nick Ren (Inactive) added a comment - Fixed in version 8848
                  Hide
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9815 Windows

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9815 Windows
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                  anuj Anuj Puram (Inactive) added a comment -

                  Passed 6.7.0 (9824) on Mac

                  Show
                  anuj Anuj Puram (Inactive) added a comment - Passed 6.7.0 (9824) on Mac
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                  smylapur Vineeth Mylapur (Inactive) added a comment -

                  Data Access panel doesn't crash here.
                  But when we click track label after doing above steps it throws
                  " Exception in thread "AWT-EventQueue-0" java.lang.UnsupportedOperationException: Not supported yet"

                  Show
                  smylapur Vineeth Mylapur (Inactive) added a comment - Data Access panel doesn't crash here. But when we click track label after doing above steps it throws " Exception in thread "AWT-EventQueue-0" java.lang.UnsupportedOperationException: Not supported yet"
                  Hide
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Please test it.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Please test it.
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  If you do anything (change the size of the window, select the track label) it all throws those errors - although not all of the stack traces are the same... here is a common one:

                  xception in thread "AWT-EventQueue-0" java.lang.UnsupportedOperationException: Not supported yet.
                  at com.affymetrix.genometryImpl.style.SimpleTrackStyle.getSummaryThreshold(SimpleTrackStyle.java:233)
                  at com.affymetrix.igb.view.SeqMapView$ThresholdXZoomer.drawTrackThresholdPoint(SeqMapView.java:511)
                  at com.affymetrix.igb.view.SeqMapView$ThresholdXZoomer.paint(SeqMapView.java:501)
                  at javax.swing.JComponent.paintChildren(JComponent.java:862)
                  at javax.swing.JComponent.paint(JComponent.java:1038)
                  at javax.swing.JComponent.paintChildren(JComponent.java:862)
                  at javax.swing.JComponent.paint(JComponent.java:1038)
                  at javax.swing.JComponent._paintImmediately(JComponent.java:5098)
                  at javax.swing.JComponent.paintImmediately(JComponent.java:4882)
                  at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:812)
                  at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:714)
                  at javax.swing.RepaintManager.prePaintDirtyRegions(RepaintManager.java:694)
                  at javax.swing.RepaintManager.access$700(RepaintManager.java:41)
                  at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1672)
                  at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:682)
                  at java.awt.EventQueue.access$000(EventQueue.java:85)
                  at java.awt.EventQueue$1.run(EventQueue.java:643)
                  at java.awt.EventQueue$1.run(EventQueue.java:641)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:652)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
                  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - If you do anything (change the size of the window, select the track label) it all throws those errors - although not all of the stack traces are the same... here is a common one: xception in thread "AWT-EventQueue-0" java.lang.UnsupportedOperationException: Not supported yet. at com.affymetrix.genometryImpl.style.SimpleTrackStyle.getSummaryThreshold(SimpleTrackStyle.java:233) at com.affymetrix.igb.view.SeqMapView$ThresholdXZoomer.drawTrackThresholdPoint(SeqMapView.java:511) at com.affymetrix.igb.view.SeqMapView$ThresholdXZoomer.paint(SeqMapView.java:501) at javax.swing.JComponent.paintChildren(JComponent.java:862) at javax.swing.JComponent.paint(JComponent.java:1038) at javax.swing.JComponent.paintChildren(JComponent.java:862) at javax.swing.JComponent.paint(JComponent.java:1038) at javax.swing.JComponent._paintImmediately(JComponent.java:5098) at javax.swing.JComponent.paintImmediately(JComponent.java:4882) at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:812) at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:714) at javax.swing.RepaintManager.prePaintDirtyRegions(RepaintManager.java:694) at javax.swing.RepaintManager.access$700(RepaintManager.java:41) at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1672) at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:682) at java.awt.EventQueue.access$000(EventQueue.java:85) at java.awt.EventQueue$1.run(EventQueue.java:643) at java.awt.EventQueue$1.run(EventQueue.java:641) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87) at java.awt.EventQueue.dispatchEvent(EventQueue.java:652) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
                  Hide
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                  anuj Anuj Puram (Inactive) added a comment -

                  Fixed in r11978

                  Show
                  anuj Anuj Puram (Inactive) added a comment - Fixed in r11978
                  Hide
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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13624, Mac, Java 1.06.0_37

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Passed V.13624, Mac, Java 1.06.0_37

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      imnick Nick Ren (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: