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  1. Bug Repository
  2. BUG-158

BAM data slices from DAS/2 not merging - ID: 3402835

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Minor
    • Resolution: Fixed
    • Labels:
      None

      Description

      Looks like BAM data slices loaded from a DAS/2 source are not being merged. Thus when one moves to a different location and hits Refresh Data a new track is created. This is a recent issue and wasn't a problem 6 months ago.

      I also noticed that the name given to the data track isn't the DAS/2 delivered name but a local temp file? This is also a new bug.

      To reproduce this navigate to chrY on Human_Feb_2009, enable the UofUBioinformatics Core DAS/2 server and goto -> BamTest -> ChrY -> select the "All Paired 101bp Fixed" track. then zoom in on a gene hit Refresh Data, move over a few mb, hit Refresh again.

      Note this is particular to BAM data and doesn't appear to be a problem with other binary data such as xxx.useq.

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            hiralv Hiral Vora (Inactive) added a comment -

            Fixed in r8824.

            Show
            hiralv Hiral Vora (Inactive) added a comment - Fixed in r8824.
            Hide
            kkubiak Katharine Kubiak (Inactive) added a comment -

            Passed v9822 Windows

            Show
            kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9822 Windows
            Hide
            anuj Anuj Puram (Inactive) added a comment -

            Passed v9906 on Mac

            Show
            anuj Anuj Puram (Inactive) added a comment - Passed v9906 on Mac
            Hide
            smylapur Vineeth Mylapur (Inactive) added a comment -

            Passed 7.0 (11923) on windows.

            Show
            smylapur Vineeth Mylapur (Inactive) added a comment - Passed 7.0 (11923) on windows.

              People

              • Assignee:
                Unassigned
                Reporter:
                hiralv Hiral Vora (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: