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  1. Bug Repository
  2. BUG-158

BAM data slices from DAS/2 not merging - ID: 3402835

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            Looks like BAM data slices loaded from a DAS/2 source are not being merged. Thus when one moves to a different location and hits Refresh Data a new track is created. This is a recent issue and wasn't a problem 6 months ago.

            I also noticed that the name given to the data track isn't the DAS/2 delivered name but a local temp file? This is also a new bug.

            To reproduce this navigate to chrY on Human_Feb_2009, enable the UofUBioinformatics Core DAS/2 server and goto -> BamTest -> ChrY -> select the "All Paired 101bp Fixed" track. then zoom in on a gene hit Refresh Data, move over a few mb, hit Refresh again.

            Note this is particular to BAM data and doesn't appear to be a problem with other binary data such as xxx.useq.

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                relates to

                Task - A task that needs to be done. BUG-647 Server bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  hiralv Hiral Vora (Inactive) created issue -
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r8824.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r8824.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Field Original Value New Value
                  Status Open [ 1 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB6.6 [ 10021 ] Bug Repository [ 10030 ]
                  Key IGBA-192 BUG-158
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Katharine Kubiak [ kkubiak ]
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9822 Windows

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                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9822 Windows
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Assignee Katharine Kubiak [ kkubiak ] Anuj Puram [ anuj ]
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                  anuj Anuj Puram (Inactive) added a comment -

                  Passed v9906 on Mac

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                  anuj Anuj Puram (Inactive) added a comment - Passed v9906 on Mac
                  anuj Anuj Puram (Inactive) made changes -
                  Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Vineeth Mylapur [ smylapur ]
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                  smylapur Vineeth Mylapur (Inactive) added a comment -

                  Passed 7.0 (11923) on windows.

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                  smylapur Vineeth Mylapur (Inactive) added a comment - Passed 7.0 (11923) on windows.
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Vineeth Mylapur [ smylapur ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-647 [ BUG-647 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
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                      Reporter:
                      hiralv Hiral Vora (Inactive)
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                      Dates

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                        Updated:
                        Resolved: