Uploaded image for project: 'Bug Repository'
  1. Bug Repository
  2. BUG-175

should not switch chromosome when file loaded

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            1 - run IGB
            2 - load H_sapiens_Feb_2009
            3 - select chr 21
            4 - exit IGB
            5 - run IGB - chr 21 is selected
            6 - File > Open File ...
            7 - select a BAM file and click Open
            file is loaded, but chr is switched to chr 1

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-623 File management bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  lfrohman Lance Frohman (Inactive) created issue -
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r9277.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r9277.
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 6.7 [ 10040 ] Bug Repository [ 10030 ]
                  Key IGBB-60 BUG-175
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Katharine Kubiak [ kkubiak ]
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Assignee Katharine Kubiak [ kkubiak ] Alyssa Gulledge [ alyssa ]
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Comment [ Passed v9818 Windows ]
                  Hide
                  Permalink
                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9818 Windows

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9818 Windows
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Anuj Puram [ anuj ]
                  Hide
                  Permalink
                  anuj Anuj Puram (Inactive) added a comment -

                  Passed 6.7.0 (9824) on Mac

                  Show
                  anuj Anuj Puram (Inactive) added a comment - Passed 6.7.0 (9824) on Mac
                  anuj Anuj Puram (Inactive) made changes -
                  Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Vineeth Mylapur [ smylapur ]
                  Hide
                  Permalink
                  smylapur Vineeth Mylapur (Inactive) added a comment -

                  Failed 7.0 (11934) on windows.
                  1 - run IGB
                  2 - load H_sapiens_Feb_2009
                  3 - select chr 21
                  4 - exit IGB
                  5 - run IGB
                  Observe the Data Access Table, there is no information of what species and genome are being loaded and the load data button also grayed.
                  It will be loaded again if we re-select it again in Data source tree.

                  Show
                  smylapur Vineeth Mylapur (Inactive) added a comment - Failed 7.0 (11934) on windows. 1 - run IGB 2 - load H_sapiens_Feb_2009 3 - select chr 21 4 - exit IGB 5 - run IGB Observe the Data Access Table, there is no information of what species and genome are being loaded and the load data button also grayed. It will be loaded again if we re-select it again in Data source tree.
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Assignee Vineeth Mylapur [ smylapur ] Alyssa Gulledge [ alyssa ]
                  Hide
                  Permalink
                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Katy - vineeth had the problem that when he reopened IGB, the titale bar said it was opening H sapiens chr 21, but the Data management table did NOT load up the ref track nor the cytobands... can you try this out a few times to see if you have the same issue?

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - Katy - vineeth had the problem that when he reopened IGB, the titale bar said it was opening H sapiens chr 21, but the Data management table did NOT load up the ref track nor the cytobands... can you try this out a few times to see if you have the same issue?
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Katharine Kubiak [ kkubiak ]
                  Hide
                  Permalink
                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Windows v11959

                  I have the same exact issue. Same result as Vineeth.

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Windows v11959 I have the same exact issue. Same result as Vineeth.
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Assignee Katharine Kubiak [ kkubiak ] Hiral Vora [ hiralv ]
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  Works fine for me. What about you?

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Works fine for me. What about you?
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  Hide
                  Permalink
                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  This doesn't happen for me - must be a windows problem

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - This doesn't happen for me - must be a windows problem
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Hiral Vora [ hiralv ]
                  Resolution Cannot Reproduce [ 5 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Cannot Reproduce [ 5 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-623 [ BUG-623 ]
                  Hide
                  Permalink
                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13655, Mac, Java 1.06.0_37

                  Steps:

                  • Open IGB
                  • load H. sapiens (H_sapiens_Feb_2009)
                  • Select chr21 from Current Genome Sequences
                  • Exit IGB (Tested with shortcut toolbar, keystroke, and through File > Exit)
                  • Open IGB

                  When IGB reopens, it is at the home screen and in the title bar reads:
                  "Integrated Genome Browser 7.0.0"

                  and no data is shown in the 'Data Management Table' or the main viewer.

                  Should also be tested in Windows environments

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Passed V.13655, Mac, Java 1.06.0_37 Steps: Open IGB load H. sapiens (H_sapiens_Feb_2009) Select chr21 from Current Genome Sequences Exit IGB (Tested with shortcut toolbar, keystroke, and through File > Exit) Open IGB When IGB reopens, it is at the home screen and in the title bar reads: "Integrated Genome Browser 7.0.0" and no data is shown in the 'Data Management Table' or the main viewer. Should also be tested in Windows environments
                  richard Richard Linchangco (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      lfrohman Lance Frohman (Inactive)
                    • Votes:
                      0 Vote for this issue
                      Watchers:
                      0 Start watching this issue

                      Dates

                      • Created:
                        Updated:
                        Resolved: