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  1. Bug Repository
  2. BUG-178

Quickload file loaded via script does not show up in tree and table

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Open attached script file in IGB. It loads the data but does not show feature in tree and feature table.

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-623 File management bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  hiralv Hiral Vora (Inactive) created issue -
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r9285.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r9285.
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Check this on branch.

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                  hiralv Hiral Vora (Inactive) added a comment - Check this on branch.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB6.6 [ 10021 ] Bug Repository [ 10030 ]
                  Key IGBA-232 BUG-178
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Katharine Kubiak [ kkubiak ]
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9854 Windows

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                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9854 Windows
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Assignee Katharine Kubiak [ kkubiak ] Anuj Puram [ anuj ]
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                  anuj Anuj Puram (Inactive) added a comment -

                  Passed 6.7.0 (9891) on Mac

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                  anuj Anuj Puram (Inactive) added a comment - Passed 6.7.0 (9891) on Mac
                  anuj Anuj Puram (Inactive) made changes -
                  Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Vineeth Mylapur [ smylapur ]
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                  smylapur Vineeth Mylapur (Inactive) added a comment - - edited

                  When we load the Script it shows an Error message as "http://igbquickload.org/quickload/A_thaliana_Jun_2009/nextgen_samples/sample.bam
                  URL provided not found or times out: "
                  I think the sample is not there.
                  But it is showing some data Data See the attached document.
                  It is showing the feature in the table.

                  Passed 7.0 (11935) on windows.

                  Show
                  smylapur Vineeth Mylapur (Inactive) added a comment - - edited When we load the Script it shows an Error message as "http://igbquickload.org/quickload/A_thaliana_Jun_2009/nextgen_samples/sample.bam URL provided not found or times out: " I think the sample is not there. But it is showing some data Data See the attached document. It is showing the feature in the table. Passed 7.0 (11935) on windows.
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Vineeth Mylapur [ smylapur ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-623 [ BUG-623 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-647 [ BUG-647 ]
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                  richard Richard Linchangco (Inactive) added a comment -

                  Opens A_thaliana_Jun_2009 TAIR10 mRNA data and a window appears stating:

                  http://igbquickload.org/quickload/A_thaliana_Jun_2009/nextgen_samples/sample.bam
                  URL provided not found or times out:

                  The file or URL appear to no longer be valid.
                  All that appears in the JTree and 'Data Management Table' is the TAIR10 mRNA and nothing else.

                  Please update the script.igb file for testing or provide a new script.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Opens A_thaliana_Jun_2009 TAIR10 mRNA data and a window appears stating: http://igbquickload.org/quickload/A_thaliana_Jun_2009/nextgen_samples/sample.bam URL provided not found or times out: The file or URL appear to no longer be valid. All that appears in the JTree and 'Data Management Table' is the TAIR10 mRNA and nothing else. Please update the script.igb file for testing or provide a new script.
                  richard Richard Linchangco (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ]
                  richard Richard Linchangco (Inactive) made changes -
                  Link This issue is blocked by BUG-647 [ BUG-647 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Attachment script.igb [ 11770 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Attachment script.igb [ 10384 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      hiralv Hiral Vora (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: