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  1. Bug Repository
  2. BUG-196

linkouts for Arabidopsis ESTs from BioViz DAS are broken

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None
          • Environment:

            Integrated Genome Browser, version: 6.5 (8017)

            Description

            There are two problems: First, two "Genbank" options appear for Arabidopsis ESTs. They are the same, and both lead to error pages at NCBI. (See attached.)

            To repeat:

            (1) Launch IGB
            (2) Choose A_thaliana_Jun_2009
            (3) Choose BioViz (DAS2) -> EST (spliced, single map)
            (4) Zoom in to about 5-7 genes. Load data
            (5) Right click one loaded EST
            (6) Select 'Get more info' and NCBI and Google as options.
            (7) Follow both links and be sure that they bring up both pages properly.

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                relates to

                Task - A task that needs to be done. BUG-674 Weblinks

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  richard Richard Linchangco (Inactive) added a comment - - edited

                  Passed V.13839, Mac, Java 1.7.0_10

                  There are links to Google and NCBI when selecting any EST of A. thaliana.

                  Examples are:

                  Google displays two results:

                  http://www.metalife.com/UniGene/At%2015526_382586
                  http://signal.salk.edu/cgi-bin/atta?JOB=TEXT&TYPE=GENE&QUERY=At1g32410

                  NCBI links directly to:

                  http://www.ncbi.nlm.nih.gov/nucest/DR291694.1

                  All links correlate to the correct, selected EST from the IGB main viewer.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - - edited Passed V.13839, Mac, Java 1.7.0_10 There are links to Google and NCBI when selecting any EST of A. thaliana. Examples are: Google displays two results: http://www.metalife.com/UniGene/At%2015526_382586 http://signal.salk.edu/cgi-bin/atta?JOB=TEXT&TYPE=GENE&QUERY=At1g32410 NCBI links directly to: http://www.ncbi.nlm.nih.gov/nucest/DR291694.1 All links correlate to the correct, selected EST from the IGB main viewer.
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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Passed on 7.0.0 (11945) Mac.
                  Both links works.

                  Show
                  fwang4 Fuquan Wang (Inactive) added a comment - Passed on 7.0.0 (11945) Mac. Both links works.
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Passes both google and ncbi link outs.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - Passes both google and ncbi link outs.
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                  anuj Anuj Puram (Inactive) added a comment -

                  6.7.0 (9824) on Mac

                  There is no get more info link

                  instead it has a link to Google directly and that works fine

                  Show
                  anuj Anuj Puram (Inactive) added a comment - 6.7.0 (9824) on Mac There is no get more info link instead it has a link to Google directly and that works fine
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9804 Windows

                  Get more info > Google or NCBI

                  Both links work.

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9804 Windows Get more info > Google or NCBI Both links work.
                  5 older comments

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated:
                        Resolved: