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  1. Bug Repository
  2. BUG-216

Edge match marks do NOT move with the gene models if the track height is changed by loading in a new track, etc.

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            The white lines of edge match remain floating after the gene models are compressed, after loading an additional track, collapsing or otherwise altering the track.

            And easy way to reproduce: load tair 10, zoom into a multiple gene model (several models). Make sure that at least one of the gene models is selected (red box). Then open bioviz and select EST single map. Observe that as soon as the new track is created (not even loaded!), the gene models compress and the edge match lines are left floating.

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                Task - A task that needs to be done. BUG-681 Main Window functions

                • Blocker - Blocks development and/or testing work, production could not run.
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                  alyssa Alyssa Gulledge (Inactive) created issue -
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Field Original Value New Value
                  Description The white lines of edge match remain floating after the gene models are compressed, after loading an additional track, collapsing or otherwise altering the track. The white lines of edge match remain floating after the gene models are compressed, after loading an additional track, collapsing or otherwise altering the track.

                  And easy way to reproduce: load tair 10, zoom into a multiple gene model (several models). Make sure that at least one of the gene models is selected (red box). Then open bioviz and select EST single map. Observe that as soon as the new track is created (not even loaded!), the gene models compress and the edge match lines are left floating.
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r9705.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r9705.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 6.7 [ 10040 ] Bug Repository [ 10030 ]
                  Key IGBB-178 BUG-216
                  fwang4 Fuquan Wang (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Fuquan Wang [ fwang4 ]
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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Passed on 7.0.0 (11884) Mac.

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                  fwang4 Fuquan Wang (Inactive) added a comment - Passed on 7.0.0 (11884) Mac.
                  fwang4 Fuquan Wang (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Fuquan Wang [ fwang4 ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-681 [ BUG-681 ]
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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13816, Mac, Java 1.7.0_10

                  Loading the EST single mapping file is now located under:

                  • IGB Quickload
                    • EST
                      • NCBI EST (single mapping)

                  Default color of 'Edge-Matching' is white. I changed it to red to be more visible for testing here through 'Preferences' > 'Other Options'

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Passed V.13816, Mac, Java 1.7.0_10 Loading the EST single mapping file is now located under: IGB Quickload EST NCBI EST (single mapping) Default color of 'Edge-Matching' is white. I changed it to red to be more visible for testing here through 'Preferences' > 'Other Options'
                  richard Richard Linchangco (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

                    People

                    • Assignee:
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                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: