Uploaded image for project: 'Bug Repository'
  1. Bug Repository
  2. BUG-223

search doesn't work unless you visit the chromosome first

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None
          • Environment:

            this affects IGB 6.5 and probably 6.6

            Description

            I'm trying to look up genes in the mouse genome by using the search function.

            However, the only way the search feature will work is if I first visit the chromosomes where the gene is located, even when I choose the search genome option.

            To repeat:

            (0) Reset prefs to defaults, restart IGB
            (1) Choose Mus musculus
            (2) Choose M_musculus_Jul_2007
            (3) Click search tab AND unclick "also search remotely"
            (4) Choose IDs or names, genome
            (5) enter query: Ctr9
            (4) click Search
            (5) observe no results appear
            (6) Click chr7
            (7) Observe gene models load from server
            (8) click Search
            (9) Observe IGB finds the gene
            (10) Click the row
            (11) Observe IGB moves to the location and also observe the search results disappear (this is another bug)

              Attachments

                Issue Links

                is blocked by

                Task - A task that needs to be done. BUG-648 Search bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  Hide
                  Permalink
                  ann.loraine Ann Loraine added a comment - - edited

                  Let's make this a top priority to fix - it seriously impairs users ability to look up genes in IGB.

                  Show
                  ann.loraine Ann Loraine added a comment - - edited Let's make this a top priority to fix - it seriously impairs users ability to look up genes in IGB.
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  As discussed, I have reverted back changes regarding whole genome.

                  Fixed in 8124.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - As discussed, I have reverted back changes regarding whole genome. Fixed in 8124.
                  Hide
                  Permalink
                  ann.loraine Ann Loraine added a comment -

                  Test fails on branch:

                  Path: .
                  URL: https://genoviz.svn.sourceforge.net/svnroot/genoviz/branches/igb_6_5
                  Repository Root: https://genoviz.svn.sourceforge.net/svnroot/genoviz
                  Repository UUID: 02abc639-694f-0410-96dc-a5594cd59667
                  Revision: 8134
                  Node Kind: directory
                  Schedule: normal
                  Last Changed Author: hiralv
                  Last Changed Rev: 8134
                  Last Changed Date: 2011-05-12 16:40:41 -0400 (Thu, 12 May 2011)

                  Show
                  ann.loraine Ann Loraine added a comment - Test fails on branch: Path: . URL: https://genoviz.svn.sourceforge.net/svnroot/genoviz/branches/igb_6_5 Repository Root: https://genoviz.svn.sourceforge.net/svnroot/genoviz Repository UUID: 02abc639-694f-0410-96dc-a5594cd59667 Revision: 8134 Node Kind: directory Schedule: normal Last Changed Author: hiralv Last Changed Rev: 8134 Last Changed Date: 2011-05-12 16:40:41 -0400 (Thu, 12 May 2011)
                  Hide
                  Permalink
                  ann.loraine Ann Loraine added a comment -

                  Results continue to be getting blanked out when user switches to new chromosome.

                  Show
                  ann.loraine Ann Loraine added a comment - Results continue to be getting blanked out when user switches to new chromosome.
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed on trunk in 8137.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed on trunk in 8137.
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  Deployed a new version with this fix. Test on preview too.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Deployed a new version with this fix. Test on preview too.
                  Hide
                  Permalink
                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9845 Windows

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9845 Windows
                  Hide
                  Permalink
                  anuj Anuj Puram (Inactive) added a comment -

                  Passed 6.7.0 (9891) on Mac

                  Show
                  anuj Anuj Puram (Inactive) added a comment - Passed 6.7.0 (9891) on Mac
                  Hide
                  Permalink
                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Failed on 7.0.0 (11884) Mac, still have to visit the chromosome first to get the correct search result.

                  Show
                  fwang4 Fuquan Wang (Inactive) added a comment - Failed on 7.0.0 (11884) Mac, still have to visit the chromosome first to get the correct search result.
                  Hide
                  Permalink
                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Also a issue on Windows v11935

                  You have to click the chromosome first before the search result appears. However the other issue (#11 from original post) of the search results disappearing is no problem now.

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Also a issue on Windows v11935 You have to click the chromosome first before the search result appears. However the other issue (#11 from original post) of the search results disappearing is no problem now.
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  It is behaving as expected.

                  To search the data it must be loaded or remote search should be turned on.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - It is behaving as expected. To search the data it must be loaded or remote search should be turned on.
                  Hide
                  Permalink
                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed (7.0.4) 15384(Mac)

                  Show
                  tkanapar Tarun Santosh (Inactive) added a comment - Passed (7.0.4) 15384(Mac)

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      ann.loraine Ann Loraine
                    • Votes:
                      0 Vote for this issue
                      Watchers:
                      0 Start watching this issue

                      Dates

                      • Created:
                        Updated:
                        Resolved: