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  1. Bug Repository
  2. BUG-310

handle tabix files

          Details

          • Type: Task
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            Add the ability to process tabix files

              Attachments

              1. CpG Islands.bed.gz
                298 kB
                Alyssa Gulledge
              2. CpG Islands.bed.gz.tbi
                202 kB
                Alyssa Gulledge

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-622 File format issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  *tabix file not supported in 7.0.0 (11884) Mac.

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                  fwang4 Fuquan Wang (Inactive) added a comment - *tabix file not supported in 7.0.0 (11884) Mac.
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Could you test this out on windows?

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                  alyssa Alyssa Gulledge (Inactive) added a comment - Could you test this out on windows?
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Can you attach a tabix file to this issue?

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                  kkubiak Katharine Kubiak (Inactive) added a comment - Can you attach a tabix file to this issue?
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                  richard Richard Linchangco (Inactive) added a comment - - edited

                  Passed V.13624, Mac, Java 1.06.0_37

                  Tested with tabix files from:

                  http://bioviz.org/filerepo/CpG Islands.bed.gz
                  http://bioviz.org/filerepo/CpG Islands.bed.gz.tbi

                  Search within first 60,000 bases (otherwise files is empty)

                  Integration of tabix file support in IGB 7.0.0(13624) could label this as a LEGACY bug

                  Show
                  richard Richard Linchangco (Inactive) added a comment - - edited Passed V.13624, Mac, Java 1.06.0_37 Tested with tabix files from: http://bioviz.org/filerepo/CpG Islands.bed.gz http://bioviz.org/filerepo/CpG Islands.bed.gz.tbi Search within first 60,000 bases (otherwise files is empty) Integration of tabix file support in IGB 7.0.0(13624) could label this as a LEGACY bug
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Still need to ensure that this file format is readable.

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                  alyssa Alyssa Gulledge (Inactive) added a comment - Still need to ensure that this file format is readable.

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: