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  1. Bug Repository
  2. BUG-317

If there are preferences set in IGB 6.6, you can't open IGB 6.7

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      Open 6.6, make some kind of change to anything. Try opening 6.7, and you get nothing.

      Error:
      loading default prefs from: /igb_default_prefs.xml
      loading user prefs from: http://www.bioviz.org/igb/releases/current/igb_prefs.xml
      loading prefs from url: http://www.bioviz.org/igb/releases/current/igb_prefs.xml
      Feb 13, 2012 1:13:46 PM com.affymetrix.igb.stylesheet.XmlStylesheetParser getSystemStylesheet
      INFO: Loading system stylesheet from resource:/igb_system_stylesheet.xml
      Feb 13, 2012 1:13:46 PM com.affymetrix.igb.prefs.WebLink autoLoad
      INFO: Loading web links from file "/Users/auser/.igb/weblinks.xml"
      ERROR: Bundle com.affymetrix.igb.IGB [22] EventDispatcher: Error during dispatch. (java.lang.NumberFormatException: For input string: "")
      java.lang.NumberFormatException: For input string: ""
      at java.lang.NumberFormatException.forInputString(NumberFormatException.java:48)
      at java.lang.Integer.parseInt(Integer.java:470)
      at java.lang.Integer.parseInt(Integer.java:499)
      at com.affymetrix.igb.general.ServerList.getServerOrder(ServerList.java:106)
      at com.affymetrix.igb.general.ServerList.access$000(ServerList.java:42)
      at com.affymetrix.igb.general.ServerList$1.compare(ServerList.java:115)
      at com.affymetrix.igb.general.ServerList$1.compare(ServerList.java:112)
      at java.util.Arrays.mergeSort(Arrays.java:1270)
      at java.util.Arrays.mergeSort(Arrays.java:1281)
      at java.util.Arrays.sort(Arrays.java:1210)
      at java.util.Collections.sort(Collections.java:159)
      at com.affymetrix.igb.general.ServerList.getAllServers(ServerList.java:111)
      at com.affymetrix.igb.general.ServerList.getEnabledServers(ServerList.java:70)
      at com.affymetrix.igb.general.ServerList.getPrimaryServer(ServerList.java:520)
      at com.affymetrix.igb.view.load.GeneralLoadUtils.loadServerMapping(GeneralLoadUtils.java:1027)
      at com.affymetrix.igb.view.load.GeneralLoadView.<init>(GeneralLoadView.java:93)
      at com.affymetrix.igb.view.load.GeneralLoadView.init(GeneralLoadView.java:81)
      at com.affymetrix.igb.view.load.GeneralLoadViewGUI.init(GeneralLoadViewGUI.java:41)
      at com.affymetrix.igb.IGB.init(IGB.java:293)
      at com.affymetrix.igb.Activator.run(Activator.java:180)
      at com.affymetrix.igb.Activator.access$000(Activator.java:45)
      at com.affymetrix.igb.Activator$1.addingService(Activator.java:120)
      at org.osgi.util.tracker.ServiceTracker$Tracked.customizerAdding(ServiceTracker.java:980)
      at org.osgi.util.tracker.ServiceTracker$Tracked.customizerAdding(ServiceTracker.java:906)
      at org.osgi.util.tracker.AbstractTracked.trackAdding(AbstractTracked.java:262)
      at org.osgi.util.tracker.AbstractTracked.track(AbstractTracked.java:234)
      at org.osgi.util.tracker.ServiceTracker$Tracked.serviceChanged(ServiceTracker.java:941)
      at org.apache.felix.framework.util.EventDispatcher$4.run(EventDispatcher.java:925)
      at java.security.AccessController.doPrivileged(Native Method)
      at org.apache.felix.framework.util.EventDispatcher.invokeServiceListenerCallback(EventDispatcher.java:921)
      at org.apache.felix.framework.util.EventDispatcher.fireEventImmediately(EventDispatcher.java:793)
      at org.apache.felix.framework.util.EventDispatcher.fireServiceEvent(EventDispatcher.java:543)
      at org.apache.felix.framework.Felix.fireServiceEvent(Felix.java:4252)
      at org.apache.felix.framework.Felix.registerService(Felix.java:3275)
      at org.apache.felix.framework.BundleContextImpl.registerService(BundleContextImpl.java:346)
      at org.apache.felix.framework.BundleContextImpl.registerService(BundleContextImpl.java:320)
      at com.affymetrix.igb.window.service.def.Activator.start(Activator.java:61)
      at org.apache.felix.framework.util.SecureAction$Actions.run(SecureAction.java:1600)
      at java.security.AccessController.doPrivileged(Native Method)
      at org.apache.felix.framework.util.SecureAction.startActivator(SecureAction.java:632)
      at org.apache.felix.framework.Felix.activateBundle(Felix.java:1977)
      at org.apache.felix.framework.Felix.startBundle(Felix.java:1895)
      at org.apache.felix.framework.Felix.setActiveStartLevel(Felix.java:1191)
      at org.apache.felix.framework.FrameworkStartLevelImpl.run(FrameworkStartLevelImpl.java:295)
      at java.lang.Thread.run(Thread.java:680)
      Feb 13, 2012 1:13:46 PM com.affymetrix.main.OSGiHandler startOSGi
      INFO: OSGi is started with org.apache.felix.framework version 4.0.1

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            Hide
            hiralv Hiral Vora (Inactive) added a comment -

            Fixed in r10258.

            Show
            hiralv Hiral Vora (Inactive) added a comment - Fixed in r10258.
            Hide
            alyssa Alyssa Gulledge (Inactive) added a comment -

            the fix works in both Mac and Windows.

            Show
            alyssa Alyssa Gulledge (Inactive) added a comment - the fix works in both Mac and Windows.
            Hide
            fwang4 Fuquan Wang (Inactive) added a comment -

            Passed on 7.0.0 (11840) Mac.

            Show
            fwang4 Fuquan Wang (Inactive) added a comment - Passed on 7.0.0 (11840) Mac.
            Hide
            alyssa Alyssa Gulledge (Inactive) added a comment -

            Always make changes to preferences in the current version, and open up test/beta without clearing changes.

            Show
            alyssa Alyssa Gulledge (Inactive) added a comment - Always make changes to preferences in the current version, and open up test/beta without clearing changes.

              People

              • Assignee:
                Unassigned
                Reporter:
                alyssa Alyssa Gulledge (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: