Uploaded image for project: 'Bug Repository'
  1. Bug Repository
  2. BUG-344

imprecision when entering a range

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            When entering a range into the range box, IGB will zoom to the approximate region, but not the exact region specified. For example, on hg19, entering "chr4:100-10000" will send IGB to something like "chr4:0-10420". Strangely, entering the same range again will send IGB to the correct location.

              Attachments

                Issue Links

                is blocked by

                Task - A task that needs to be done. BUG-648 Search bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  michafla Michael Lawrence (Inactive) created issue -
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Project IGB 6.7 [ 10040 ] IGB 7.0 [ 10140 ]
                  Key IGBB-357 IGBC-125
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Anuj Puram [ anuj ]
                  Hide
                  Permalink
                  anuj Anuj Puram (Inactive) added a comment -

                  cannot reproduce it on r10791

                  Show
                  anuj Anuj Puram (Inactive) added a comment - cannot reproduce it on r10791
                  anuj Anuj Puram (Inactive) made changes -
                  Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
                  Hide
                  Permalink
                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  I can get this to happen... On my Mac, if you set genome to homo sapiens, and then enter the range chr4:100-10000, I get chr4 : 0 - 10,117. Then I can get it to refine down to what I asked for... and any other changes I make in the range box afterwards works correctly. It is first time you enter values for a new chromosome that they are incorrect.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - I can get this to happen... On my Mac, if you set genome to homo sapiens, and then enter the range chr4:100-10000, I get chr4 : 0 - 10,117. Then I can get it to refine down to what I asked for... and any other changes I make in the range box afterwards works correctly. It is first time you enter values for a new chromosome that they are incorrect.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Anuj Puram [ anuj ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Anuj Puram [ anuj ] Hiral Vora [ hiralv ]
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed on trunk in r10990.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed on trunk in r10990.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-125 BUG-344
                  Hide
                  Permalink
                  darius darius added a comment -

                  Passed 7.0.0 (11806)

                  Show
                  darius darius added a comment - Passed 7.0.0 (11806)
                  darius darius made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Darius Bost [ darius ]
                  darius darius made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Darius Bost [ darius ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-684 [ BUG-684 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-648 [ BUG-648 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-684 [ BUG-684 ]
                  tkanapar Tarun Santosh (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
                  Hide
                  Permalink
                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed (7.0.4) 15393(Mac)

                  Show
                  tkanapar Tarun Santosh (Inactive) added a comment - Passed (7.0.4) 15393(Mac)
                  tkanapar Tarun Santosh (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      michafla Michael Lawrence (Inactive)
                    • Votes:
                      0 Vote for this issue
                      Watchers:
                      0 Start watching this issue

                      Dates

                      • Created:
                        Updated:
                        Resolved: