Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Fixed
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Labels:None
Description
Create a depth graph. Create a second one. A seoncd one appears in the Data management track list, but does not appear in the window. If you delete the second track (no data) from the table, the data disappears from the one that is shown. refresh (but don't MOVE the zoom, still shows nothing. Now zoom out to new data and refresh, everything reappears.
Attachments
Issue Links
- is blocked by
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BUG-639 IGB generated graphs
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- Closed
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Somewhere in this process, IGB threw:
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at java.util.Arrays.binarySearch(Arrays.java:1417)
at com.affymetrix.genometryImpl.symmetry.GraphSym.determineBegIndex(GraphSym.java:338)
at com.affymetrix.igb.shared.AbstractGraphGlyph.DrawTheGraph(AbstractGraphGlyph.java:332)
at com.affymetrix.igb.shared.AbstractGraphGlyph.oldDraw(AbstractGraphGlyph.java:280)
at com.affymetrix.igb.shared.AbstractGraphGlyph.doDraw(AbstractGraphGlyph.java:1259)
at com.affymetrix.igb.shared.AbstractGraphGlyph.draw(AbstractGraphGlyph.java:1275)
at com.affymetrix.genoviz.bioviews.Glyph.drawTraversal(Glyph.java:127)
at com.affymetrix.igb.shared.TierGlyph.drawTraversal(TierGlyph.java:388)
at com.affymetrix.genoviz.bioviews.Glyph.drawChildren(Glyph.java:168)
at com.affymetrix.genoviz.bioviews.Glyph.drawTraversal(Glyph.java:128)
at com.affymetrix.genoviz.glyph.RootGlyph.drawTraversal(RootGlyph.java:74)
at com.affymetrix.genoviz.bioviews.View.normalDraw(View.java:446)
at com.affymetrix.genoviz.bioviews.View.draw(View.java:357)
at com.affymetrix.genoviz.bioviews.View.componentPainted(View.java:865)
at com.affymetrix.genoviz.awt.NeoCanvas.postPaintEvent(NeoCanvas.java:72)
at com.affymetrix.genoviz.awt.NeoCanvas.paintComponent(NeoCanvas.java:47)
at javax.swing.JComponent.paint(JComponent.java:1029)
at javax.swing.JComponent.paintChildren(JComponent.java:862)
at javax.swing.JComponent.paint(JComponent.java:1038)
at javax.swing.JComponent.paintChildren(JComponent.java:862)
at javax.swing.JSplitPane.paintChildren(JSplitPane.java:1030)
at javax.swing.JComponent.paint(JComponent.java:1038)
at java.awt.GraphicsCallback$PaintCallback.run(GraphicsCallback.java:34)
at sun.awt.SunGraphicsCallback.runOneComponent(SunGraphicsCallback.java:60)
at sun.awt.SunGraphicsCallback.runComponents(SunGraphicsCallback.java:97)
at java.awt.Container.paint(Container.java:1793)
at com.affymetrix.genoviz.widget.NeoMap.paint(NeoMap.java:1234)
at javax.swing.JComponent.paintChildren(JComponent.java:876)
at javax.swing.JComponent.paint(JComponent.java:1038)
at javax.swing.JComponent._paintImmediately(JComponent.java:5098)
at javax.swing.JComponent.paintImmediately(JComponent.java:4882)
at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:812)
at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:714)
at javax.swing.RepaintManager.prePaintDirtyRegions(RepaintManager.java:694)
at javax.swing.RepaintManager.access$700(RepaintManager.java:41)
at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1672)
at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:677)
at java.awt.EventQueue.access$000(EventQueue.java:85)
at java.awt.EventQueue$1.run(EventQueue.java:638)
at java.awt.EventQueue$1.run(EventQueue.java:636)
at java.security.AccessController.doPrivileged(Native Method)
at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
at java.awt.EventQueue.dispatchEvent(EventQueue.java:647)
at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)