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  1. Bug Repository
  2. BUG-425

Empty Graph track stays gray after hit load data

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            Empty Graph track stays gray after hit load data

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                is blocked by

                Task - A task that needs to be done. BUG-638 Graph files

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  lfrohman Lance Frohman (Inactive) created issue -
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Please give me a test case - either a file that creates and empty graph or an example from accessible data...

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                  alyssa Alyssa Gulledge (Inactive) added a comment - Please give me a test case - either a file that creates and empty graph or an example from accessible data...
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Lance Frohman [ lfrohman ]
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                  lfrohman Lance Frohman (Inactive) added a comment -

                  Use any of the attached files from https://igbjira.uncc.edu/jira/browse/IGBC-209
                  They all have data on chr21, but not on any other chr

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                  lfrohman Lance Frohman (Inactive) added a comment - Use any of the attached files from https://igbjira.uncc.edu/jira/browse/IGBC-209 They all have data on chr21, but not on any other chr
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                  hiralv Hiral Vora (Inactive) added a comment -

                  It's seems be other way around now. Now even before you hit load data, its black only.

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                  hiralv Hiral Vora (Inactive) added a comment - It's seems be other way around now. Now even before you hit load data, its black only.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Lance Frohman [ lfrohman ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r11805.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r11805.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  in v.11848, the original problem remains. The track is gray, then I hit load data, and the track remains gray instead of changing to black.

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                  alyssa Alyssa Gulledge (Inactive) added a comment - in v.11848, the original problem remains. The track is gray, then I hit load data, and the track remains gray instead of changing to black.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Cannot reproduce. See attached image.

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                  hiralv Hiral Vora (Inactive) added a comment - Cannot reproduce. See attached image.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  Attachment graph.png [ 11069 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Attachment refse1_depth_21.wig [ 11070 ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  I am attaching one of these files. To recreate bug: Load homo sapiens, go to chr21. drag in this file. See that the track is grey. Hit load data. Data pops in on black background (good). NOW change to chr1. ref track pops in on black, this file is on grey. hit load data. There is no data in this file for chr1, BUT IGB should indicate that it tried to load by changing the grey background to black, and just show no data.

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                  alyssa Alyssa Gulledge (Inactive) added a comment - I am attaching one of these files. To recreate bug: Load homo sapiens, go to chr21. drag in this file. See that the track is grey. Hit load data. Data pops in on black background (good). NOW change to chr1. ref track pops in on black, this file is on grey. hit load data. There is no data in this file for chr1, BUT IGB should indicate that it tried to load by changing the grey background to black, and just show no data.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r11889.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r11889.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-175 BUG-425
                  darius darius made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Comment [ Was able to drag in file but saw no data show at chr21. Everything else worked fine. ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-638 [ BUG-638 ]
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                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13751, Mac, Java 1.7.0_09

                  Followed directions posted by Alyssa, 2 comments above, and background changes from dark grey (not yet loaded data) to a light grey background with data if present.

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                  richard Richard Linchangco (Inactive) added a comment - Passed V.13751, Mac, Java 1.7.0_09 Followed directions posted by Alyssa, 2 comments above, and background changes from dark grey (not yet loaded data) to a light grey background with data if present.
                  richard Richard Linchangco (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  Assignee Alyssa Gulledge [ alyssa ]

                    People

                    • Assignee:
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                      Reporter:
                      lfrohman Lance Frohman (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: