Details
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Type:
Bug
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Fixed
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Labels:None
Description
1. Open A thaliana, TAIR10. Zoom in on a single gene.
2. Load data set NetAffx (DAS2) > affy > ATH1-121501 and load data.
3. Move to a new gene. Set load mode to "Don't Load" on the ATH1 data set. Load data should not be available.
4. Now add the AG netaffx concensus data set. Leave it set to 'region in view'. Load data button should now be available; load data with the button.
5. The AG set should load and the ATH1 set should not. Move to chromosome 2. Only the TAIR10 (set to genomic) should load. Zoom in on a single gene and hit Load data. Again, AG should load, ATH1 should not.
Testing Results:
Sept 27, 2010 - Alyssa Gulledge
Version 6.3.1 (6959) Based on the test case description, this seems to be working properly. After loading the 'region in view' or 'whole chromosome' for chr1, and then setting to 'don't load', the affy set did not show up in on any other chromosome. It was retained, even while set to 'don't load', on the view of chr1.
Attachments
Issue Links
- relates to
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BUG-663 Load Modes
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Status | Open [ 1 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Assignee | Afshan Jalali [ afshan ] |
| Status | Reopened [ 4 ] | Resolved [ 5 ] |
| Resolution | Fixed [ 1 ] |
| Status | Resolved [ 5 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Assignee | Katharine Kubiak [ kkubiak ] |
| Assignee | Katharine Kubiak [ kkubiak ] | Alyssa Gulledge [ alyssa ] |
| Description |
1. Open the genome Arabidopsis thaliana version A_thaliana _Jun_2009 2. Load the data set Bioviz(quick load): -> TAIR9 ALL and refresh data. 3. Load another data set NetAffx (DAS2) > affy > ATH1-121501 and refresh data. 4. Choose the load mode for one of them from "region in view" to "Don't Load" and refresh data. The data set with load mode "Don't Load" should not load. 5. Now choose the current sequence to chr2 and refresh data, the data set with load mode "Don't Load" should not load. Testing Results: Sept 27, 2010 - Alyssa Gulledge Version 6.3.1 (6959) Based on the test case description, this seems to be working properly. After loading the 'region in view' or 'whole chromosome' for chr1, and then setting to 'don't load', the affy set did not show up in on any other chromosome. It was retained, even while set to 'don't load', on the view of chr1. |
1. Open A thaliana, TAIR10. Zoom in on a single gene. 2. Load data set NetAffx (DAS2) > affy > ATH1-121501 and load data. 3. Move to a new gene. Set load mode to "Don't Load" on the ATH1 data set. Load data should not be available. 4. Now add the AG netaffx concensus data set. Leave it set to 'region in view'. Load data button should now be available; load data with the button. 5. The AG set should load and the ATH1 set should not. Move to chromosome 2. Only the TAIR10 (set to genomic) should load. Zoom in on a single gene and hit Load data. Again, AG should load, ATH1 should not. Testing Results: Sept 27, 2010 - Alyssa Gulledge Version 6.3.1 (6959) Based on the test case description, this seems to be working properly. After loading the 'region in view' or 'whole chromosome' for chr1, and then setting to 'don't load', the affy set did not show up in on any other chromosome. It was retained, even while set to 'don't load', on the view of chr1. |
Adjusted the test case to reflect current version 6.7. Passed.
| Status | Reopened [ 4 ] | Resolved [ 5 ] |
| Assignee | Alyssa Gulledge [ alyssa ] | |
| Resolution | Fixed [ 1 ] |
| Status | Resolved [ 5 ] | Closed [ 6 ] |
Passed on 7.0.0 (11945) Mac.
| Resolution | Fixed [ 1 ] | |
| Status | Closed [ 6 ] | Reopened [ 4 ] |
| Assignee | Fuquan Wang [ fwang4 ] |
| Status | Reopened [ 4 ] | Resolved [ 5 ] |
| Assignee | Fuquan Wang [ fwang4 ] | |
| Resolution | Fixed [ 1 ] |
| Resolution | Fixed [ 1 ] | |
| Status | Resolved [ 5 ] | Reopened [ 4 ] |
| Link | This issue relates to BUG-664 [ BUG-664 ] |
| Link | This issue relates to BUG-664 [ BUG-664 ] |
| Status | Reopened [ 4 ] | Closed [ 6 ] |
| Resolution | Fixed [ 1 ] |
Version 6.7.0 (Windows)
This seems to still be an issue. When setting ATH1-121501 to "Don't Load" and leaving TAIR9 as "Region", then switching to chr2 it worked. But, when setting TAIR9 to "Don't Load" and setting ATH1-121501 to "Region" and switching to chr2, they both still load.