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  1. Bug Repository
  2. BUG-503

change strand color on Annotations tab

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            not working, it works on the Track Preferences, Data Management. Also - make sure that all locations reflect current color prior to change.

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                Issue Links

                relates to

                Task - A task that needs to be done. BUG-659 Annotations tab

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

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                  kkubiak Katharine Kubiak (Inactive) added a comment - - edited

                  Windows v12164

                  When I activate 'Color' under the Track Adjuster I get this exception:

                  Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
                  at com.affymetrix.igb.shared.TrackPreferencesA.strandsForwardColorComboBoxActionPerformedA(TrackPreferencesA.java:244)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI.strandsForwardColorComboBoxActionPerformed(TrackPreferencesGUI.java:736)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI.access$2200(TrackPreferencesGUI.java:29)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI$25.actionPerformed(TrackPreferencesGUI.java:482)
                  at com.jidesoft.combobox.AbstractComboBox.fireActionEvent(Unknown Source)
                  at com.jidesoft.combobox.AbstractComboBox.setSelectedItem(Unknown Source)
                  at com.jidesoft.combobox.ColorComboBox.setSelectedItem(Unknown Source)
                  at com.jidesoft.combobox.AbstractComboBox.setSelectedItem(Unknown Source)
                  at com.jidesoft.combobox.ColorComboBox.setSelectedColor(Unknown Source)
                  at com.affymetrix.igb.shared.TrackPreferencesA.strandsForwardColorComboBoxReset(TrackPreferencesA.java:636)
                  at com.affymetrix.igb.shared.TrackPreferencesA.strandsColorCheckBoxActionPerformedA(TrackPreferencesA.java:188)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI.strandsColorCheckBoxActionPerformed(TrackPreferencesGUI.java:724)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI.access$2000(TrackPreferencesGUI.java:29)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI$23.actionPerformed(TrackPreferencesGUI.java:454)
                  at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
                  at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
                  at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
                  at javax.swing.JToggleButton$ToggleButtonModel.setPressed(Unknown Source)
                  at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source)
                  at java.awt.Component.processMouseEvent(Unknown Source)
                  at javax.swing.JComponent.processMouseEvent(Unknown Source)
                  at java.awt.Component.processEvent(Unknown Source)
                  at java.awt.Container.processEvent(Unknown Source)
                  at java.awt.Component.dispatchEventImpl(Unknown Source)
                  at java.awt.Container.dispatchEventImpl(Unknown Source)
                  at java.awt.Component.dispatchEvent(Unknown Source)
                  at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
                  at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
                  at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
                  at java.awt.Container.dispatchEventImpl(Unknown Source)
                  at java.awt.Window.dispatchEventImpl(Unknown Source)
                  at java.awt.Component.dispatchEvent(Unknown Source)
                  at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
                  at java.awt.EventQueue.access$000(Unknown Source)
                  at java.awt.EventQueue$1.run(Unknown Source)
                  at java.awt.EventQueue$1.run(Unknown Source)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
                  at java.awt.EventQueue$2.run(Unknown Source)
                  at java.awt.EventQueue$2.run(Unknown Source)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
                  at java.awt.EventQueue.dispatchEvent(Unknown Source)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
                  at java.awt.EventDispatchThread.run(Unknown Source)

                  I inactivated and activated it a second time and get this exception:
                  Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
                  at com.affymetrix.igb.shared.TrackPreferencesA.strandsReverseColorComboBoxActionPerformedA(TrackPreferencesA.java:259)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI.strandsReverseColorComboBoxActionPerformed(TrackPreferencesGUI.java:742)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI.access$2100(TrackPreferencesGUI.java:29)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI$24.actionPerformed(TrackPreferencesGUI.java:471)
                  at com.jidesoft.combobox.AbstractComboBox.fireActionEvent(Unknown Source)
                  at com.jidesoft.combobox.AbstractComboBox.setSelectedItem(Unknown Source)
                  at com.jidesoft.combobox.ColorComboBox.setSelectedItem(Unknown Source)
                  at com.jidesoft.combobox.AbstractComboBox.setSelectedItem(Unknown Source)
                  at com.jidesoft.combobox.ColorComboBox.setSelectedColor(Unknown Source)
                  at com.affymetrix.igb.shared.TrackPreferencesA.strandsReverseColorComboBoxReset(TrackPreferencesA.java:658)
                  at com.affymetrix.igb.shared.TrackPreferencesA.strandsColorCheckBoxActionPerformedA(TrackPreferencesA.java:189)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI.strandsColorCheckBoxActionPerformed(TrackPreferencesGUI.java:724)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI.access$2000(TrackPreferencesGUI.java:29)
                  at com.affymetrix.igb.shared.TrackPreferencesGUI$23.actionPerformed(TrackPreferencesGUI.java:454)
                  at javax.swing.AbstractButton.fireActionPerformed(Unknown Source)
                  at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source)
                  at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source)
                  at javax.swing.JToggleButton$ToggleButtonModel.setPressed(Unknown Source)
                  at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source)
                  at java.awt.Component.processMouseEvent(Unknown Source)
                  at javax.swing.JComponent.processMouseEvent(Unknown Source)
                  at java.awt.Component.processEvent(Unknown Source)
                  at java.awt.Container.processEvent(Unknown Source)
                  at java.awt.Component.dispatchEventImpl(Unknown Source)
                  at java.awt.Container.dispatchEventImpl(Unknown Source)
                  at java.awt.Component.dispatchEvent(Unknown Source)
                  at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source)
                  at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source)
                  at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source)
                  at java.awt.Container.dispatchEventImpl(Unknown Source)
                  at java.awt.Window.dispatchEventImpl(Unknown Source)
                  at java.awt.Component.dispatchEvent(Unknown Source)
                  at java.awt.EventQueue.dispatchEventImpl(Unknown Source)
                  at java.awt.EventQueue.access$000(Unknown Source)
                  at java.awt.EventQueue$1.run(Unknown Source)
                  at java.awt.EventQueue$1.run(Unknown Source)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
                  at java.awt.EventQueue$2.run(Unknown Source)
                  at java.awt.EventQueue$2.run(Unknown Source)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source)
                  at java.awt.EventQueue.dispatchEvent(Unknown Source)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
                  at java.awt.EventDispatchThread.pumpEvents(Unknown Source)
                  at java.awt.EventDispatchThread.run(Unknown Source)

                  When trying again for a third time there are no exceptions. And same issue here for me: Color is not adjusting from the track adjuster, only from Pref > Tracks

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - - edited Windows v12164 When I activate 'Color' under the Track Adjuster I get this exception: Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at com.affymetrix.igb.shared.TrackPreferencesA.strandsForwardColorComboBoxActionPerformedA(TrackPreferencesA.java:244) at com.affymetrix.igb.shared.TrackPreferencesGUI.strandsForwardColorComboBoxActionPerformed(TrackPreferencesGUI.java:736) at com.affymetrix.igb.shared.TrackPreferencesGUI.access$2200(TrackPreferencesGUI.java:29) at com.affymetrix.igb.shared.TrackPreferencesGUI$25.actionPerformed(TrackPreferencesGUI.java:482) at com.jidesoft.combobox.AbstractComboBox.fireActionEvent(Unknown Source) at com.jidesoft.combobox.AbstractComboBox.setSelectedItem(Unknown Source) at com.jidesoft.combobox.ColorComboBox.setSelectedItem(Unknown Source) at com.jidesoft.combobox.AbstractComboBox.setSelectedItem(Unknown Source) at com.jidesoft.combobox.ColorComboBox.setSelectedColor(Unknown Source) at com.affymetrix.igb.shared.TrackPreferencesA.strandsForwardColorComboBoxReset(TrackPreferencesA.java:636) at com.affymetrix.igb.shared.TrackPreferencesA.strandsColorCheckBoxActionPerformedA(TrackPreferencesA.java:188) at com.affymetrix.igb.shared.TrackPreferencesGUI.strandsColorCheckBoxActionPerformed(TrackPreferencesGUI.java:724) at com.affymetrix.igb.shared.TrackPreferencesGUI.access$2000(TrackPreferencesGUI.java:29) at com.affymetrix.igb.shared.TrackPreferencesGUI$23.actionPerformed(TrackPreferencesGUI.java:454) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) at javax.swing.JToggleButton$ToggleButtonModel.setPressed(Unknown Source) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source) at java.awt.Component.processMouseEvent(Unknown Source) at javax.swing.JComponent.processMouseEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$000(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue$2.run(Unknown Source) at java.awt.EventQueue$2.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) I inactivated and activated it a second time and get this exception: Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException at com.affymetrix.igb.shared.TrackPreferencesA.strandsReverseColorComboBoxActionPerformedA(TrackPreferencesA.java:259) at com.affymetrix.igb.shared.TrackPreferencesGUI.strandsReverseColorComboBoxActionPerformed(TrackPreferencesGUI.java:742) at com.affymetrix.igb.shared.TrackPreferencesGUI.access$2100(TrackPreferencesGUI.java:29) at com.affymetrix.igb.shared.TrackPreferencesGUI$24.actionPerformed(TrackPreferencesGUI.java:471) at com.jidesoft.combobox.AbstractComboBox.fireActionEvent(Unknown Source) at com.jidesoft.combobox.AbstractComboBox.setSelectedItem(Unknown Source) at com.jidesoft.combobox.ColorComboBox.setSelectedItem(Unknown Source) at com.jidesoft.combobox.AbstractComboBox.setSelectedItem(Unknown Source) at com.jidesoft.combobox.ColorComboBox.setSelectedColor(Unknown Source) at com.affymetrix.igb.shared.TrackPreferencesA.strandsReverseColorComboBoxReset(TrackPreferencesA.java:658) at com.affymetrix.igb.shared.TrackPreferencesA.strandsColorCheckBoxActionPerformedA(TrackPreferencesA.java:189) at com.affymetrix.igb.shared.TrackPreferencesGUI.strandsColorCheckBoxActionPerformed(TrackPreferencesGUI.java:724) at com.affymetrix.igb.shared.TrackPreferencesGUI.access$2000(TrackPreferencesGUI.java:29) at com.affymetrix.igb.shared.TrackPreferencesGUI$23.actionPerformed(TrackPreferencesGUI.java:454) at javax.swing.AbstractButton.fireActionPerformed(Unknown Source) at javax.swing.AbstractButton$Handler.actionPerformed(Unknown Source) at javax.swing.DefaultButtonModel.fireActionPerformed(Unknown Source) at javax.swing.JToggleButton$ToggleButtonModel.setPressed(Unknown Source) at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(Unknown Source) at java.awt.Component.processMouseEvent(Unknown Source) at javax.swing.JComponent.processMouseEvent(Unknown Source) at java.awt.Component.processEvent(Unknown Source) at java.awt.Container.processEvent(Unknown Source) at java.awt.Component.dispatchEventImpl(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.LightweightDispatcher.retargetMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.processMouseEvent(Unknown Source) at java.awt.LightweightDispatcher.dispatchEvent(Unknown Source) at java.awt.Container.dispatchEventImpl(Unknown Source) at java.awt.Window.dispatchEventImpl(Unknown Source) at java.awt.Component.dispatchEvent(Unknown Source) at java.awt.EventQueue.dispatchEventImpl(Unknown Source) at java.awt.EventQueue.access$000(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.awt.EventQueue$1.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue$2.run(Unknown Source) at java.awt.EventQueue$2.run(Unknown Source) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(Unknown Source) at java.awt.EventQueue.dispatchEvent(Unknown Source) at java.awt.EventDispatchThread.pumpOneEventForFilters(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForFilter(Unknown Source) at java.awt.EventDispatchThread.pumpEventsForHierarchy(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.pumpEvents(Unknown Source) at java.awt.EventDispatchThread.run(Unknown Source) When trying again for a third time there are no exceptions. And same issue here for me: Color is not adjusting from the track adjuster, only from Pref > Tracks
                  Hide
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                  lfrohman Lance Frohman (Inactive) added a comment -

                  NullPointerException fixed rev 12166

                  Show
                  lfrohman Lance Frohman (Inactive) added a comment - NullPointerException fixed rev 12166
                  Hide
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  No longer throws an exception Windows v12166

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - No longer throws an exception Windows v12166
                  Hide
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                  lfrohman Lance Frohman (Inactive) added a comment -

                  This is not working because for some reason, the ActionListeners for the
                  forward and reverse color combobox are not being called. In TrackPreferencesGUI.java

                  Show
                  lfrohman Lance Frohman (Inactive) added a comment - This is not working because for some reason, the ActionListeners for the forward and reverse color combobox are not being called. In TrackPreferencesGUI.java
                  Hide
                  Permalink
                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Fixed in 12181.

                  Show
                  fwang4 Fuquan Wang (Inactive) added a comment - Fixed in 12181.
                  Hide
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed Windows v12263

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed Windows v12263

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: