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  1. Bug Repository
  2. BUG-513

Deleting all of the tracks out of a joined graph throws error

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Minor
    • Resolution: Fixed
    • Labels:
      None

      Description

      Load 2 graphs, join. Make sure they are NOT collapsed (each individual graph has it's 'thumb' exposed). Using the 'thumb', select one graph and use the 'Delete Graph' button in the Graph tab. Delete the second in the same way. Deleting the tracks in the joined track should just delete the joined track as well as the track. The error trace is as follows:

      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.refreshSelection(TrackPreferencesSeqMapViewPanel.java:38)
      at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.trackstylePropertyChanged(TrackPreferencesSeqMapViewPanel.java:90)
      at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47)
      at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29)
      at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280)
      at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182)
      at com.affymetrix.igb.view.load.DataManagementTableModel.setValueAt(DataManagementTableModel.java:322)
      at javax.swing.JTable.setValueAt(JTable.java:2710)
      at com.jidesoft.grid.JideTable.editingStopped(Unknown Source)
      at javax.swing.AbstractCellEditor.fireEditingStopped(AbstractCellEditor.java:125)
      at com.affymetrix.genoviz.swing.ButtonTableCellEditor.actionPerformed(ButtonTableCellEditor.java:61)
      at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
      at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
      at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
      at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
      at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
      at java.awt.Component.processMouseEvent(Component.java:6375)
      at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
      at java.awt.Component.processEvent(Component.java:6140)
      at java.awt.Container.processEvent(Container.java:2083)
      at java.awt.Component.dispatchEventImpl(Component.java:4737)
      at java.awt.Container.dispatchEventImpl(Container.java:2141)
      at java.awt.Component.dispatchEvent(Component.java:4565)
      at javax.swing.plaf.basic.BasicTableUI$Handler.repostEvent(BasicTableUI.java:918)
      at javax.swing.plaf.basic.BasicTableUI$Handler.mouseReleased(BasicTableUI.java:1134)
      at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273)
      at java.awt.Component.processMouseEvent(Component.java:6375)
      at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
      at java.awt.Component.processEvent(Component.java:6140)
      at java.awt.Container.processEvent(Container.java:2083)
      at java.awt.Component.dispatchEventImpl(Component.java:4737)
      at java.awt.Container.dispatchEventImpl(Container.java:2141)
      at java.awt.Component.dispatchEvent(Component.java:4565)
      at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
      at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
      at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
      at java.awt.Container.dispatchEventImpl(Container.java:2127)
      at java.awt.Window.dispatchEventImpl(Window.java:2482)
      at java.awt.Component.dispatchEvent(Component.java:4565)
      at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:684)
      at java.awt.EventQueue.access$000(EventQueue.java:85)
      at java.awt.EventQueue$1.run(EventQueue.java:643)
      at java.awt.EventQueue$1.run(EventQueue.java:641)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
      at java.awt.EventQueue$2.run(EventQueue.java:657)
      at java.awt.EventQueue$2.run(EventQueue.java:655)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
      at java.awt.EventQueue.dispatchEvent(EventQueue.java:654)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
      at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
      at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.refreshSelection(TrackPreferencesSeqMapViewPanel.java:38)
      at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.trackstylePropertyChanged(TrackPreferencesSeqMapViewPanel.java:90)
      at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47)
      at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29)
      at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280)
      at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182)
      at com.affymetrix.igb.view.load.DataManagementTableModel.createVirtualFeatures(DataManagementTableModel.java:91)
      at com.affymetrix.igb.view.load.GeneralLoadView$5.run(GeneralLoadView.java:427)
      at com.affymetrix.genometryImpl.util.ThreadUtils.runOnEventQueue(ThreadUtils.java:29)
      at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementTable(GeneralLoadView.java:423)
      at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementView(GeneralLoadView.java:435)
      at com.affymetrix.igb.view.load.GeneralLoadView$8.finished(GeneralLoadView.java:653)
      at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:54)
      at javax.swing.SwingWorker$5.run(SwingWorker.java:717)
      at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:814)
      at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:95)
      at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:824)
      at javax.swing.Timer.fireActionPerformed(Timer.java:291)
      at javax.swing.Timer$DoPostEvent.run(Timer.java:221)
      at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
      at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:682)
      at java.awt.EventQueue.access$000(EventQueue.java:85)
      at java.awt.EventQueue$1.run(EventQueue.java:643)
      at java.awt.EventQueue$1.run(EventQueue.java:641)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
      at java.awt.EventQueue.dispatchEvent(EventQueue.java:652)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
      at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
      at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

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            hiralv Hiral Vora (Inactive) added a comment -

            Fixed in r12272.

            Show
            hiralv Hiral Vora (Inactive) added a comment - Fixed in r12272.
            Hide
            richard Richard Linchangco (Inactive) added a comment -

            V.13674, Mac, Java 1.7.0_09

            In this version of IGB (13674) when graphs are joined, they are not listed in the 'Data Management Table'. If the graphs are split they will reappear onto the 'Data Management Table'

            Is this bug still relevant?

            Show
            richard Richard Linchangco (Inactive) added a comment - V.13674, Mac, Java 1.7.0_09 In this version of IGB (13674) when graphs are joined, they are not listed in the 'Data Management Table'. If the graphs are split they will reappear onto the 'Data Management Table' Is this bug still relevant?

              People

              • Assignee:
                Unassigned
                Reporter:
                alyssa Alyssa Gulledge (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: