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  1. Bug Repository
  2. BUG-513

Deleting all of the tracks out of a joined graph throws error

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Minor
          • Resolution: Fixed
          • Labels:
            None

            Description

            Load 2 graphs, join. Make sure they are NOT collapsed (each individual graph has it's 'thumb' exposed). Using the 'thumb', select one graph and use the 'Delete Graph' button in the Graph tab. Delete the second in the same way. Deleting the tracks in the joined track should just delete the joined track as well as the track. The error trace is as follows:

            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.refreshSelection(TrackPreferencesSeqMapViewPanel.java:38)
            at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.trackstylePropertyChanged(TrackPreferencesSeqMapViewPanel.java:90)
            at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47)
            at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29)
            at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280)
            at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182)
            at com.affymetrix.igb.view.load.DataManagementTableModel.setValueAt(DataManagementTableModel.java:322)
            at javax.swing.JTable.setValueAt(JTable.java:2710)
            at com.jidesoft.grid.JideTable.editingStopped(Unknown Source)
            at javax.swing.AbstractCellEditor.fireEditingStopped(AbstractCellEditor.java:125)
            at com.affymetrix.genoviz.swing.ButtonTableCellEditor.actionPerformed(ButtonTableCellEditor.java:61)
            at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
            at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
            at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
            at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
            at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
            at java.awt.Component.processMouseEvent(Component.java:6375)
            at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
            at java.awt.Component.processEvent(Component.java:6140)
            at java.awt.Container.processEvent(Container.java:2083)
            at java.awt.Component.dispatchEventImpl(Component.java:4737)
            at java.awt.Container.dispatchEventImpl(Container.java:2141)
            at java.awt.Component.dispatchEvent(Component.java:4565)
            at javax.swing.plaf.basic.BasicTableUI$Handler.repostEvent(BasicTableUI.java:918)
            at javax.swing.plaf.basic.BasicTableUI$Handler.mouseReleased(BasicTableUI.java:1134)
            at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273)
            at java.awt.Component.processMouseEvent(Component.java:6375)
            at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
            at java.awt.Component.processEvent(Component.java:6140)
            at java.awt.Container.processEvent(Container.java:2083)
            at java.awt.Component.dispatchEventImpl(Component.java:4737)
            at java.awt.Container.dispatchEventImpl(Container.java:2141)
            at java.awt.Component.dispatchEvent(Component.java:4565)
            at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
            at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
            at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
            at java.awt.Container.dispatchEventImpl(Container.java:2127)
            at java.awt.Window.dispatchEventImpl(Window.java:2482)
            at java.awt.Component.dispatchEvent(Component.java:4565)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:684)
            at java.awt.EventQueue.access$000(EventQueue.java:85)
            at java.awt.EventQueue$1.run(EventQueue.java:643)
            at java.awt.EventQueue$1.run(EventQueue.java:641)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
            at java.awt.EventQueue$2.run(EventQueue.java:657)
            at java.awt.EventQueue$2.run(EventQueue.java:655)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:654)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
            Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
            at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.refreshSelection(TrackPreferencesSeqMapViewPanel.java:38)
            at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.trackstylePropertyChanged(TrackPreferencesSeqMapViewPanel.java:90)
            at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47)
            at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29)
            at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280)
            at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182)
            at com.affymetrix.igb.view.load.DataManagementTableModel.createVirtualFeatures(DataManagementTableModel.java:91)
            at com.affymetrix.igb.view.load.GeneralLoadView$5.run(GeneralLoadView.java:427)
            at com.affymetrix.genometryImpl.util.ThreadUtils.runOnEventQueue(ThreadUtils.java:29)
            at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementTable(GeneralLoadView.java:423)
            at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementView(GeneralLoadView.java:435)
            at com.affymetrix.igb.view.load.GeneralLoadView$8.finished(GeneralLoadView.java:653)
            at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:54)
            at javax.swing.SwingWorker$5.run(SwingWorker.java:717)
            at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:814)
            at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:95)
            at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:824)
            at javax.swing.Timer.fireActionPerformed(Timer.java:291)
            at javax.swing.Timer$DoPostEvent.run(Timer.java:221)
            at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
            at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:682)
            at java.awt.EventQueue.access$000(EventQueue.java:85)
            at java.awt.EventQueue$1.run(EventQueue.java:643)
            at java.awt.EventQueue$1.run(EventQueue.java:641)
            at java.security.AccessController.doPrivileged(Native Method)
            at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
            at java.awt.EventQueue.dispatchEvent(EventQueue.java:652)
            at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
            at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
            at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
            at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
            at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-637 Graph >Join/Split bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  alyssa Alyssa Gulledge (Inactive) created issue -
                  Hide
                  Permalink
                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r12272.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r12272.
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.0 [ 10140 ] Bug Repository [ 10030 ]
                  Key IGBC-413 BUG-513
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue relates to BUG-637 [ BUG-637 ]
                  Hide
                  Permalink
                  richard Richard Linchangco (Inactive) added a comment -

                  V.13674, Mac, Java 1.7.0_09

                  In this version of IGB (13674) when graphs are joined, they are not listed in the 'Data Management Table'. If the graphs are split they will reappear onto the 'Data Management Table'

                  Is this bug still relevant?

                  Show
                  richard Richard Linchangco (Inactive) added a comment - V.13674, Mac, Java 1.7.0_09 In this version of IGB (13674) when graphs are joined, they are not listed in the 'Data Management Table'. If the graphs are split they will reappear onto the 'Data Management Table' Is this bug still relevant?
                  richard Richard Linchangco (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Summary Deleting all of the tracks outo f a joined graph throws error Deleting all of the tracks out of a joined graph throws error
                  Description Load 2 graphs, join. While joined, delete both tracks from data management table. Deleting the second one throws the error. Deleting the tracks in the joined track should just delete the joined track as well as the track:

                  Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
                  at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.refreshSelection(TrackPreferencesSeqMapViewPanel.java:38)
                  at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.trackstylePropertyChanged(TrackPreferencesSeqMapViewPanel.java:90)
                  at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47)
                  at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29)
                  at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280)
                  at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182)
                  at com.affymetrix.igb.view.load.DataManagementTableModel.setValueAt(DataManagementTableModel.java:322)
                  at javax.swing.JTable.setValueAt(JTable.java:2710)
                  at com.jidesoft.grid.JideTable.editingStopped(Unknown Source)
                  at javax.swing.AbstractCellEditor.fireEditingStopped(AbstractCellEditor.java:125)
                  at com.affymetrix.genoviz.swing.ButtonTableCellEditor.actionPerformed(ButtonTableCellEditor.java:61)
                  at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
                  at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
                  at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
                  at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
                  at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
                  at java.awt.Component.processMouseEvent(Component.java:6375)
                  at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
                  at java.awt.Component.processEvent(Component.java:6140)
                  at java.awt.Container.processEvent(Container.java:2083)
                  at java.awt.Component.dispatchEventImpl(Component.java:4737)
                  at java.awt.Container.dispatchEventImpl(Container.java:2141)
                  at java.awt.Component.dispatchEvent(Component.java:4565)
                  at javax.swing.plaf.basic.BasicTableUI$Handler.repostEvent(BasicTableUI.java:918)
                  at javax.swing.plaf.basic.BasicTableUI$Handler.mouseReleased(BasicTableUI.java:1134)
                  at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273)
                  at java.awt.Component.processMouseEvent(Component.java:6375)
                  at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
                  at java.awt.Component.processEvent(Component.java:6140)
                  at java.awt.Container.processEvent(Container.java:2083)
                  at java.awt.Component.dispatchEventImpl(Component.java:4737)
                  at java.awt.Container.dispatchEventImpl(Container.java:2141)
                  at java.awt.Component.dispatchEvent(Component.java:4565)
                  at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
                  at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
                  at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
                  at java.awt.Container.dispatchEventImpl(Container.java:2127)
                  at java.awt.Window.dispatchEventImpl(Window.java:2482)
                  at java.awt.Component.dispatchEvent(Component.java:4565)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:684)
                  at java.awt.EventQueue.access$000(EventQueue.java:85)
                  at java.awt.EventQueue$1.run(EventQueue.java:643)
                  at java.awt.EventQueue$1.run(EventQueue.java:641)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
                  at java.awt.EventQueue$2.run(EventQueue.java:657)
                  at java.awt.EventQueue$2.run(EventQueue.java:655)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:654)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
                  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
                  Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
                  at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.refreshSelection(TrackPreferencesSeqMapViewPanel.java:38)
                  at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.trackstylePropertyChanged(TrackPreferencesSeqMapViewPanel.java:90)
                  at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47)
                  at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29)
                  at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280)
                  at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182)
                  at com.affymetrix.igb.view.load.DataManagementTableModel.createVirtualFeatures(DataManagementTableModel.java:91)
                  at com.affymetrix.igb.view.load.GeneralLoadView$5.run(GeneralLoadView.java:427)
                  at com.affymetrix.genometryImpl.util.ThreadUtils.runOnEventQueue(ThreadUtils.java:29)
                  at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementTable(GeneralLoadView.java:423)
                  at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementView(GeneralLoadView.java:435)
                  at com.affymetrix.igb.view.load.GeneralLoadView$8.finished(GeneralLoadView.java:653)
                  at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:54)
                  at javax.swing.SwingWorker$5.run(SwingWorker.java:717)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:814)
                  at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:95)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:824)
                  at javax.swing.Timer.fireActionPerformed(Timer.java:291)
                  at javax.swing.Timer$DoPostEvent.run(Timer.java:221)
                  at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:682)
                  at java.awt.EventQueue.access$000(EventQueue.java:85)
                  at java.awt.EventQueue$1.run(EventQueue.java:643)
                  at java.awt.EventQueue$1.run(EventQueue.java:641)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:652)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
                  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
                  		 Load 2 graphs, join. Make sure they are NOT collapsed (each individual graph has it's 'thumb' exposed). Using the 'thumb', select one graph and use the 'Delete Graph' button in the Graph tab. Delete the second in the same way. Deleting the tracks in the joined track should just delete the joined track as well as the track. The error trace is as follows:

                  Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
                  at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.refreshSelection(TrackPreferencesSeqMapViewPanel.java:38)
                  at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.trackstylePropertyChanged(TrackPreferencesSeqMapViewPanel.java:90)
                  at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47)
                  at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29)
                  at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280)
                  at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182)
                  at com.affymetrix.igb.view.load.DataManagementTableModel.setValueAt(DataManagementTableModel.java:322)
                  at javax.swing.JTable.setValueAt(JTable.java:2710)
                  at com.jidesoft.grid.JideTable.editingStopped(Unknown Source)
                  at javax.swing.AbstractCellEditor.fireEditingStopped(AbstractCellEditor.java:125)
                  at com.affymetrix.genoviz.swing.ButtonTableCellEditor.actionPerformed(ButtonTableCellEditor.java:61)
                  at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2028)
                  at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2351)
                  at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:387)
                  at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:242)
                  at javax.swing.plaf.basic.BasicButtonListener.mouseReleased(BasicButtonListener.java:236)
                  at java.awt.Component.processMouseEvent(Component.java:6375)
                  at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
                  at java.awt.Component.processEvent(Component.java:6140)
                  at java.awt.Container.processEvent(Container.java:2083)
                  at java.awt.Component.dispatchEventImpl(Component.java:4737)
                  at java.awt.Container.dispatchEventImpl(Container.java:2141)
                  at java.awt.Component.dispatchEvent(Component.java:4565)
                  at javax.swing.plaf.basic.BasicTableUI$Handler.repostEvent(BasicTableUI.java:918)
                  at javax.swing.plaf.basic.BasicTableUI$Handler.mouseReleased(BasicTableUI.java:1134)
                  at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:273)
                  at java.awt.Component.processMouseEvent(Component.java:6375)
                  at javax.swing.JComponent.processMouseEvent(JComponent.java:3267)
                  at java.awt.Component.processEvent(Component.java:6140)
                  at java.awt.Container.processEvent(Container.java:2083)
                  at java.awt.Component.dispatchEventImpl(Component.java:4737)
                  at java.awt.Container.dispatchEventImpl(Container.java:2141)
                  at java.awt.Component.dispatchEvent(Component.java:4565)
                  at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4619)
                  at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4280)
                  at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4210)
                  at java.awt.Container.dispatchEventImpl(Container.java:2127)
                  at java.awt.Window.dispatchEventImpl(Window.java:2482)
                  at java.awt.Component.dispatchEvent(Component.java:4565)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:684)
                  at java.awt.EventQueue.access$000(EventQueue.java:85)
                  at java.awt.EventQueue$1.run(EventQueue.java:643)
                  at java.awt.EventQueue$1.run(EventQueue.java:641)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:98)
                  at java.awt.EventQueue$2.run(EventQueue.java:657)
                  at java.awt.EventQueue$2.run(EventQueue.java:655)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:654)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
                  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
                  Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
                  at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.refreshSelection(TrackPreferencesSeqMapViewPanel.java:38)
                  at com.affymetrix.igb.trackAdjuster.TrackPreferencesSeqMapViewPanel.trackstylePropertyChanged(TrackPreferencesSeqMapViewPanel.java:90)
                  at com.affymetrix.igb.shared.TrackstylePropertyMonitor.firePropertyChanged(TrackstylePropertyMonitor.java:47)
                  at com.affymetrix.igb.shared.TrackstylePropertyMonitor.tableChanged(TrackstylePropertyMonitor.java:29)
                  at javax.swing.table.AbstractTableModel.fireTableChanged(AbstractTableModel.java:280)
                  at javax.swing.table.AbstractTableModel.fireTableDataChanged(AbstractTableModel.java:182)
                  at com.affymetrix.igb.view.load.DataManagementTableModel.createVirtualFeatures(DataManagementTableModel.java:91)
                  at com.affymetrix.igb.view.load.GeneralLoadView$5.run(GeneralLoadView.java:427)
                  at com.affymetrix.genometryImpl.util.ThreadUtils.runOnEventQueue(ThreadUtils.java:29)
                  at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementTable(GeneralLoadView.java:423)
                  at com.affymetrix.igb.view.load.GeneralLoadView.refreshDataManagementView(GeneralLoadView.java:435)
                  at com.affymetrix.igb.view.load.GeneralLoadView$8.finished(GeneralLoadView.java:653)
                  at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:54)
                  at javax.swing.SwingWorker$5.run(SwingWorker.java:717)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:814)
                  at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:95)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:824)
                  at javax.swing.Timer.fireActionPerformed(Timer.java:291)
                  at javax.swing.Timer$DoPostEvent.run(Timer.java:221)
                  at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:682)
                  at java.awt.EventQueue.access$000(EventQueue.java:85)
                  at java.awt.EventQueue$1.run(EventQueue.java:643)
                  at java.awt.EventQueue$1.run(EventQueue.java:641)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:87)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:652)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
                  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

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                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                        Updated:
                        Resolved: