Please attach a .chp file

Passed v9906 on Mac

Windows v9998

When loading 'TisMap_Brain...' file:
Error window pops up with this message "Couldn't find genome data on server for CHP file, genome = Unknown Genome 1"
And this is thrown in console:

Jan 26, 2012 4:00:47 PM com.affymetrix.igb.featureloader.QuickLoad logException
WARNING: null
java.lang.NullPointerException
at com.affymetrix.igb.featureloader.QuickLoad.addMethodsToFeature(QuickLoad.java:306)
at com.affymetrix.igb.featureloader.QuickLoad.loadAndAddAllSymmetries(QuickLoad.java:286)
at com.affymetrix.igb.featureloader.QuickLoad.access$000(QuickLoad.java:46)
at com.affymetrix.igb.featureloader.QuickLoad$1.runInBackground(QuickLoad.java:194)
at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:38)
at javax.swing.SwingWorker$1.call(Unknown Source)
at java.util.concurrent.FutureTask$Sync.innerRun(Unknown Source)
at java.util.concurrent.FutureTask.run(Unknown Source)
at javax.swing.SwingWorker.run(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(Unknown Source)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(Unknown Source)
at java.lang.Thread.run(Unknown Source)

When loading 'Arabidopsis...' file:
Error window pops up with this message "CHP file is in legacy format, cannot be loaded"
And this is thrown in console:

MainWorkspaceManager:itemStateChanged hit
Parsing CHP file: C:\DOCUME~1\Itsadmin\LOCALS~1\Temp\ArabidopsisATH1-121502.CHP.gz4314423230498306116.tmp
CHP file is for legacy data: affymetrix.fusion.chp.FusionCHPLegacyData@1b0a038
Alg name: ExpressionStat
Alg version: 5.0
Assay type: 0
Chip type: ATH1-121501
Rows: 712, Columns: 712
Parent .cel file: ArabidopsisATH1-121502.CEL
Program ID: GeneChipAnalysis.GEBaseCall.1
number of probesets: 22810
MainWorkspaceManager:itemStateChanged hit
Stopped loading, parsing Legacy CHP data only partially implemented!

-------------------------------------------------------
ERROR: CHP file is in legacy format, cannot be loaded

The error for the TisMap remains. The pop-up reports:

Chp parsing failed with the following exception:
java.lang.ClassCastException: java.lang.String cannot be cast to com.affymetrix.genometryImpl.das2.Das2ServerInfo
See console output for more details about this error.

and the console reports:

Parsing CHP file: /var/folders/XG/XGHkYUt9Gu82T4cqiJhnxE+++TQ/Tmp/TisMap_Brain_01_v1_WTGene1.rma-gene-default.chp.gz5103046306038830873.tmp
CHP file is for expression array, without detection info: affymetrix.fusion.chp.FusionCHPQuantificationData@3d26172f
array type: HuGene-1_0-st-v1, alg name = rma-gene-default, version = 1.0
probeset count: 33297
Probsets with integer id: 33297
Probsets with string id: 0
done parsing quantification CHP file

-------------------------------------------------------
Chp parsing failed: Chp parsing failed with the following exception:
java.lang.ClassCastException: java.lang.String cannot be cast to com.affymetrix.genometryImpl.das2.Das2ServerInfo
java.lang.ClassCastException: java.lang.String cannot be cast to com.affymetrix.genometryImpl.das2.Das2ServerInfo
at com.affymetrix.igb.parsers.ChpParser.makeLazyChpSyms(ChpParser.java:289)
at com.affymetrix.igb.parsers.ChpParser.parseQuantChp(ChpParser.java:254)
at com.affymetrix.igb.parsers.ChpParser.parse(ChpParser.java:106)
at com.affymetrix.igb.parsers.QuickLoadSymLoaderChp.getGenome(QuickLoadSymLoaderChp.java:65)
at com.affymetrix.genometryImpl.quickload.QuickLoadSymLoader.loadAndAddAllSymmetries(QuickLoadSymLoader.java:206)
at com.affymetrix.igb.view.load.GeneralLoadUtils$5.runInBackground(GeneralLoadUtils.java:1323)
at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:38)
at javax.swing.SwingWorker$1.call(SwingWorker.java:277)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at javax.swing.SwingWorker.run(SwingWorker.java:316)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at java.lang.Thread.run(Thread.java:680)

TisMap is either a legacy format and IGB is not reading it as such, OR it is current .chp format and is not being parsed correctly

Fixed in r10033.

Passed 7.0.0 (11963)

Passed V.13526, Mac, Java 1.06.0_37

Both files failed to load and both threw the following Errors:

-------------------------------------------------------
ERROR: Couldn't find genome data on server for CHP file, genome = Unknown Genome 1
-------------------------------------------------------

-------------------------------------------------------
ERROR: Couldn't find genome data on server for file, genome = Unknown Genome 1
-------------------------------------------------------

Passed V.13655, Mac, Java 1.06.0_37

When uploading any .chp files a pop up window offers:

"Unable to load data set for this file.
Would you like to remove this file from the list?"

Click 'Yes' and it removes the data set from the 'Data Management Table'