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  1. Bug Repository
  2. BUG-621

GUI Test: Sequence Viewer

          Details

          • Type: Task
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Open Sequence Viewer (Whole Gene Model)

            • View Menu
            • Shortcut keystroke
            • Toolbar button (First enable, then use)
            • Right-click Menu

            Open items in Sequence Viewer:

            • Ensure title bar accuracy
            • 'Show cDNA' grayed out except for gene models
            • Whole gene model
            • Single exon (CDS and UTR)
            • Highlighted/Selected sequence
            • Cytoband (Human or Mouse)

            View Short reads (Load a BAM file):

            • Open Short read sequence via View, keystroke, Toolbar button, and right-click Menu (Known issue:Selection lost with right-click Menu)
            • Short Read, Genomic
            • Short Read, Insertion (Insertion different color) and Deletion

            File (Open saved file to check accuracy):

            • Save As Fasta
            • Save As Fasta (Reverse Complement)
            • Export Image
            • Close Sequence Viewer (Menu and Keystroke)

            Copy (Paste into Text Editor to ensure accuracy):

            • Select All (Menu and Keystroke)
            • Copy Selected DNA Sequence
            • Copy DNA with lowercase...
            • Copy Annotated Translation
            • Copy Selected Translation(s)

            Show

            • Reverse Complement (Ensure start and stop are accurately identified)
            • Complement
            • All + Translation
            • All - Translation

            Colors/'Show cDNA' (Use Whole Gene Model):

            • Check both color schemes
            • Ensure 'Show cDNA' and 'Show genomic' work (Button switches AND function works)

              Attachments

                Issue Links

                blocks

                Task - A task that needs to be done. BUG-608 Sequence viewer bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  richard Richard Linchangco (Inactive) created issue -
                  richard Richard Linchangco (Inactive) made changes -
                  Field Original Value New Value
                  Link This issue blocks BUG-608 [ BUG-608 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Description Open Sequence Viewer (Whole Gene Model)
                  * View Menu
                  * Shortcut keystroke
                  * Toolbar button (First enable, then use)
                  * Right-click Menu

                  Open items in Sequence Viewer:
                  * Whole gene model
                  * Single exon (CDS and UTR)
                  * Highlighted/Selected sequence
                  * Cytoband (Human or Mouse)
                  * Short Read, Genomic (Load a BAM file)
                  * Short Read, Read (Same read;Check keystroke and Toolbar button)
                  richard Richard Linchangco (Inactive) made changes -
                  Description Open Sequence Viewer (Whole Gene Model)
                  * View Menu
                  * Shortcut keystroke
                  * Toolbar button (First enable, then use)
                  * Right-click Menu

                  Open items in Sequence Viewer:
                  * Whole gene model
                  * Single exon (CDS and UTR)
                  * Highlighted/Selected sequence
                  * Cytoband (Human or Mouse)
                  * Short Read, Genomic (Load a BAM file)
                  * Short Read, Read (Same read;Check keystroke and Toolbar button)

                  		 Open Sequence Viewer (Whole Gene Model)
                  * View Menu
                  * Shortcut keystroke
                  * Toolbar button (First enable, then use)
                  * Right-click Menu

                  Open items in Sequence Viewer:
                  * Ensure title bar accuracy
                  * 'Show cDNA' grayed out except for gene models
                  * Whole gene model
                  * Single exon (CDS and UTR)
                  * Highlighted/Selected sequence
                  * Cytoband (Human or Mouse)

                  View Short reads (Load a BAM file):
                  * Open Short read sequence via View, keystroke, Toolbar button, and right-click Menu (Known issue:Selection lost with right-click Menu)
                  * Short Read, Genomic
                  * Short Read, Insertion (Insertion different color) and Deletion

                  File (Open saved file to check accuracy):
                  * Save As Fasta
                  * Save As Fasta (Reverse Complement)
                  * Export Image
                  * Close Sequence Viewer (Menu and Keystroke)

                  Copy (Paste into Text Editor to ensure accuracy):
                  * Select All (Menu and Keystroke)
                  * Copy Selected DNA Sequence
                  * Copy DNA with lowercase...
                  * Copy Annotated Translation
                  * Copy Selected Translation(s)

                  Show
                  * Reverse Complement (Ensure start and stop are accurately identified)
                  * Complement
                  * All + Translation
                  * All - Translation

                  Colors/'Show cDNA' (Use Whole Gene Model):
                  * Check both color schemes
                  * Ensure 'Show cDNA' and 'Show genomic' work (Button switches AND function works)
                  richard Richard Linchangco (Inactive) made changes -
                  Assignee Ann Loraine [ aloraine ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Richard Linchangco [ richard ]
                  richard Richard Linchangco (Inactive) made changes -
                  Assignee Richard Linchangco [ richard ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      richard Richard Linchangco (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: