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  1. Bug Repository
  2. BUG-66

Partial loading of BNIB files

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Add to User Guide
            BNIB files can also be partially loaded for the range of the chromosome in view. Since BNIB files use a lot of memory, partial loading can be useful if you have many tracks open at once.

            Open IGB, do NOT choose a species. Download the attached file to desktop, then drag into IGB. Chose 'Load region in view' and Zoom in entirely. click Load Data. Now zoom out slightly to see that only the selected portion of the file loaded (sequence) and not the whole track. This method will load the sequence file as a track and NOT as a reference sequence (this is correct).

            Test Case Results
            Oct 1, 2010 - Alyssa Gulledge

            version 6.4 (6969) This is working exactly as described. Picture 1 shows the gray bar that was partially loaded (then zoomed out a bit.)

              Attachments

              2. issue_bnib.bmp
                2.05 MB
                Katharine Kubiak
              3. log for bnib partial load.png
                204 kB
                Afshan Jalali
              4. picture for bnib partial load.png
                115 kB
                Afshan Jalali

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-622 File format issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  anuj Anuj Puram (Inactive) added a comment -

                  Passed v9906 on Mac

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                  anuj Anuj Puram (Inactive) added a comment - Passed v9906 on Mac
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  I followed the description and ended up with a light grey bar. I took a screen shot (attached issue_bnib.bmp).

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - I followed the description and ended up with a light grey bar. I took a screen shot (attached issue_bnib.bmp).
                  Hide
                  Permalink
                  richard Richard Linchangco (Inactive) added a comment -

                  Passed V.13526, Mac, Java 1.06.0_37

                  'Load Region in View' NO LONGER EXISTS in IGB 7.0.0 (13526). BNIB sequence files are loaded as their own track and if user zooms in to a certain region and clicks 'Load Data' at the top of the main viewer, only that region will load. 'Load Mode' is automatically set to Manual to allow for partial loading of data.

                  Show
                  richard Richard Linchangco (Inactive) added a comment - Passed V.13526, Mac, Java 1.06.0_37 'Load Region in View' NO LONGER EXISTS in IGB 7.0.0 (13526). BNIB sequence files are loaded as their own track and if user zooms in to a certain region and clicks 'Load Data' at the top of the main viewer, only that region will load. 'Load Mode' is automatically set to Manual to allow for partial loading of data.

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      afshan Afshan Jalali (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: