[BUG-76] Gff file doesn't loads correctly - JIRA UNCC

Details

Type: Bug
Status: Closed (View Workflow)
Priority: Major
Resolution: Fixed
Labels:
None

Description

1. Right click file NC_000913.gff.ftploc (attached) in a new window

2. When you click on new window it will tell you that this is a binary file: save this file to desktop. Drag into IGB.

3. The file should load without error. Previously there have been error like "Multiple CDS regions with distinct IDs and a shared parent have been detected in a GFF3 file".

Sourceforge# 3040749

Testing Results:
Sept 21, 2010 - Alyssa Gulledge

Version 6.3.1 (6884) problem seems to be fixed. Several .gff loaded without error.

Attachments

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Attachments

File-NC_000913.gff.ftploc
0.3 kB
02/Sep/11 9:11 AM
NC_000913.gff.zip
757 kB
14/Jun/12 9:06 AM

Issue Links

relates to

BUG-622 File format issues

Closed

Activity

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Afshan Jalali (Inactive) created issue - 09/Mar/11 5:02 AM

Afshan Jalali (Inactive) made changes - 24/Mar/11 1:22 PM

Field	Original Value	New Value
Status	Open [ 1 ]	Closed [ 6 ]
Resolution		Fixed [ 1 ]

Alyssa Gulledge (Inactive) made changes - 08/Apr/11 11:21 AM

Project	IGB6.5 [ 10010 ]	Bug Repository [ 10030 ]
Key	~~IGB-56~~	~~BUG-76~~

Alyssa Gulledge (Inactive) made changes - 31/Aug/11 5:48 AM

Resolution	Fixed [ 1 ]
Status	Closed [ 6 ]	Reopened [ 4 ]

Nick Ren (Inactive) made changes - 31/Aug/11 11:21 AM

Assignee

Afshan Jalali [ afshan ]

Alyssa Gulledge [ alyssa ]

Alyssa Gulledge (Inactive) made changes - 02/Sep/11 9:11 AM

Attachment		File-NC_000913.gff.ftploc [ 10360 ]
Description	1. Download file NC_000913.gff from ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655/ 2. Open this file in IGB 3. The file should load without error. Previously there have been error like "Multiple CDS regions with distinct IDs and a shared parent have been detected in a GFF3 file". Sourceforge# 3040749 Testing Results: Sept 21, 2010 - Alyssa Gulledge Version 6.3.1 (6884) problem seems to be fixed. Several .gff loaded without error.	1. open file NC_000913.gff (attached) 2. Open this file in IGB 3. The file should load without error. Previously there have been error like "Multiple CDS regions with distinct IDs and a shared parent have been detected in a GFF3 file". Sourceforge# 3040749 Testing Results: Sept 21, 2010 - Alyssa Gulledge Version 6.3.1 (6884) problem seems to be fixed. Several .gff loaded without error.

Alyssa Gulledge (Inactive) made changes - 02/Sep/11 9:11 AM

Status	Reopened [ 4 ]	Resolved [ 5 ]
Resolution		Fixed [ 1 ]

Alyssa Gulledge (Inactive) made changes - 02/Sep/11 9:12 AM

Status	Resolved [ 5 ]	Closed [ 6 ]
Assignee	Alyssa Gulledge [ alyssa ]

Alyssa Gulledge (Inactive) made changes - 09/Jan/12 11:51 AM

Resolution	Fixed [ 1 ]
Status	Closed [ 6 ]	Reopened [ 4 ]
Assignee		Anuj Puram [ anuj ]

Anuj Puram (Inactive) made changes - 23/Jan/12 6:33 AM

Assignee

Anuj Puram [ anuj ]

Alyssa Gulledge [ alyssa ]

Alyssa Gulledge (Inactive) made changes - 23/Jan/12 6:43 AM

Description

1. open file NC_000913.gff (attached)

2. Open this file in IGB

3. The file should load without error. Previously there have been error like "Multiple CDS regions with distinct IDs and a shared parent have been detected in a GFF3 file".

Sourceforge# 3040749

Testing Results:
Sept 21, 2010 - Alyssa Gulledge

Version 6.3.1 (6884) problem seems to be fixed. Several .gff loaded without error.

1. Right click file NC_000913.gff.ftploc (attached) in a new window

2. When you click on new window it will tell you that this is a binary file: save this file to desktop. Drag into IGB.

3. The file should load without error. Previously there have been error like "Multiple CDS regions with distinct IDs and a shared parent have been detected in a GFF3 file".

Sourceforge# 3040749

Testing Results:
Sept 21, 2010 - Alyssa Gulledge

Version 6.3.1 (6884) problem seems to be fixed. Several .gff loaded without error.

Alyssa Gulledge (Inactive) made changes - 23/Jan/12 6:44 AM

Assignee

Alyssa Gulledge [ alyssa ]

Anuj Puram [ anuj ]

Anuj Puram (Inactive) made changes - 23/Jan/12 7:45 AM

Assignee

Anuj Puram [ anuj ]

Alyssa Gulledge [ alyssa ]

Alyssa Gulledge (Inactive) made changes - 23/Jan/12 8:05 AM

Assignee

Alyssa Gulledge [ alyssa ]

Anuj Puram [ anuj ]

Anuj Puram (Inactive) made changes - 23/Jan/12 8:18 AM

Assignee

Anuj Puram [ anuj ]

Katharine Kubiak [ kkubiak ]

Alyssa Gulledge (Inactive) made changes - 23/Jan/12 8:22 AM

Status	Reopened [ 4 ]	Closed [ 6 ]
Assignee	Katharine Kubiak [ kkubiak ]
Resolution		Fixed [ 1 ]

Vineeth Mylapur (Inactive) made changes - 12/Jun/12 11:20 AM

Resolution	Fixed [ 1 ]
Status	Closed [ 6 ]	Reopened [ 4 ]
Assignee		Vineeth Mylapur [ smylapur ]

Vineeth Mylapur (Inactive) made changes - 12/Jun/12 11:21 AM

Assignee

Vineeth Mylapur [ smylapur ]

Alyssa Gulledge [ alyssa ]

Alyssa Gulledge (Inactive) made changes - 14/Jun/12 9:06 AM

Attachment

NC_000913.gff.zip [ 11086 ]

Alyssa Gulledge (Inactive) made changes - 14/Jun/12 10:03 AM

Status	Reopened [ 4 ]	Resolved [ 5 ]
Assignee	Alyssa Gulledge [ alyssa ]
Resolution		Fixed [ 1 ]

Alyssa Gulledge (Inactive) made changes - 14/Jun/12 10:03 AM

Status

Resolved [ 5 ]

Closed [ 6 ]

Richard Linchangco (Inactive) made changes - 13/Nov/12 10:25 AM

Resolution	Fixed [ 1 ]
Status	Closed [ 6 ]	Reopened [ 4 ]

Alyssa Gulledge (Inactive) made changes - 15/Nov/12 9:56 AM

Link

This issue relates to ~~BUG-622~~ [ ~~BUG-622~~ ]

Richard Linchangco (Inactive) made changes - 27/Nov/12 9:56 AM

Status	Reopened [ 4 ]	Resolved [ 5 ]
Assignee		Alyssa Gulledge [ alyssa ]
Resolution		Fixed [ 1 ]

Alyssa Gulledge (Inactive) made changes - 28/Nov/12 11:01 AM

Resolution	Fixed [ 1 ]
Status	Resolved [ 5 ]	Reopened [ 4 ]
Assignee	Alyssa Gulledge [ alyssa ]

Richard Linchangco (Inactive) made changes - 04/Dec/12 7:08 AM

Status	Reopened [ 4 ]	Resolved [ 5 ]
Assignee		Alyssa Gulledge [ alyssa ]
Resolution		Fixed [ 1 ]

Alyssa Gulledge (Inactive) made changes - 04/Dec/12 8:27 AM

Assignee

Alyssa Gulledge [ alyssa ]

Alyssa Gulledge (Inactive) made changes - 04/Dec/12 8:28 AM

Status

Resolved [ 5 ]

Closed [ 6 ]

People

Assignee:

Unassigned

Reporter:

Afshan Jalali (Inactive)

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Dates

Created:

09/Mar/11 5:02 AM

Updated:

04/Dec/12 8:28 AM

Resolved:

04/Dec/12 7:08 AM