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  1. Bug Repository
  2. BUG-825

Error in using three graphs for 'mean' operation?

    Details

    • Type: Bug
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Fixed
    • Labels:
      None

      Description

      I loaded 3 bams, got depth graphs, zoomed in, select these three graphs asked for a 'mean' and got the following error.

      Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
      at com.affymetrix.igb.view.SeqMapView.setToolTip(SeqMapView.java:2343)
      at com.affymetrix.igb.view.SeqMapView.setShowPropertiesTooltip(SeqMapView.java:2417)
      at com.affymetrix.igb.action.ToggleToolTipAction.actionPerformed(ToggleToolTipAction.java:46)
      at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2018)
      at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2341)
      at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402)
      at javax.swing.JToggleButton$ToggleButtonModel.setPressed(JToggleButton.java:308)
      at javax.swing.AbstractButton.doClick(AbstractButton.java:376)
      at com.apple.laf.ScreenMenuItemCheckbox.itemStateChanged(ScreenMenuItemCheckbox.java:196)
      at java.awt.CheckboxMenuItem.processItemEvent(CheckboxMenuItem.java:389)
      at java.awt.CheckboxMenuItem.processEvent(CheckboxMenuItem.java:357)
      at java.awt.MenuComponent.dispatchEventImpl(MenuComponent.java:351)
      at java.awt.MenuComponent.dispatchEvent(MenuComponent.java:339)
      at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:732)
      at java.awt.EventQueue.access$200(EventQueue.java:103)
      at java.awt.EventQueue$3.run(EventQueue.java:688)
      at java.awt.EventQueue$3.run(EventQueue.java:686)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
      at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:87)
      at java.awt.EventQueue$4.run(EventQueue.java:702)
      at java.awt.EventQueue$4.run(EventQueue.java:700)
      at java.security.AccessController.doPrivileged(Native Method)
      at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:76)
      at java.awt.EventQueue.dispatchEvent(EventQueue.java:699)
      at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:242)
      at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:161)
      at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:150)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:146)
      at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:138)
      at java.awt.EventDispatchThread.run(EventDispatchThread.java:91)
      java.lang.NullPointerException
      at com.affymetrix.genometryImpl.style.GraphState.getHeatMap(GraphState.java:162)
      at com.affymetrix.genometryImpl.operator.AbstractGraphOperator.operate(AbstractGraphOperator.java:181)
      at com.affymetrix.genometryImpl.symloader.Delegate.getRegion(Delegate.java:105)
      at com.affymetrix.genometryImpl.quickload.QuickLoadSymLoader.loadAndAddSymmetries(QuickLoadSymLoader.java:155)
      at com.affymetrix.genometryImpl.quickload.QuickLoadSymLoader.loadSymmetriesThread(QuickLoadSymLoader.java:129)
      at com.affymetrix.genometryImpl.quickload.QuickLoadSymLoader.loadFeatures(QuickLoadSymLoader.java:109)
      at com.affymetrix.genometryImpl.symloader.Delegate.loadFeatures(Delegate.java:180)
      at com.affymetrix.genometryImpl.util.LocalFilesServerType.loadFeatures(LocalFilesServerType.java:101)
      at com.affymetrix.igb.view.load.GeneralLoadUtils.loadFeaturesForSym(GeneralLoadUtils.java:846)
      at com.affymetrix.igb.view.load.GeneralLoadUtils$3.runInBackground(GeneralLoadUtils.java:786)
      at com.affymetrix.igb.view.load.GeneralLoadUtils$3.runInBackground(GeneralLoadUtils.java:781)
      at com.affymetrix.genometryImpl.thread.CThreadWorker.doInBackground(CThreadWorker.java:61)
      at javax.swing.SwingWorker$1.call(SwingWorker.java:296)
      at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
      at java.util.concurrent.FutureTask.run(FutureTask.java:166)
      at javax.swing.SwingWorker.run(SwingWorker.java:335)
      at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
      at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
      at java.lang.Thread.run(Thread.java:722)

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            Hide
            hiralv Hiral Vora (Inactive) added a comment -

            Fixed in r14685.

            Show
            hiralv Hiral Vora (Inactive) added a comment - Fixed in r14685.
            Hide
            tkanapar Tarun Santosh (Inactive) added a comment -

            Passed in Mac IGB 7.0.4 (15396)

            Show
            tkanapar Tarun Santosh (Inactive) added a comment - Passed in Mac IGB 7.0.4 (15396)

              People

              • Assignee:
                Unassigned
                Reporter:
                alyssa Alyssa Gulledge (Inactive)
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                Dates

                • Created:
                  Updated:
                  Resolved: