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  1. Bug Repository
  2. BUG-828

wrong info for selected item

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            I selected the final CDS in this gene model, but IGB does not report the true length of the CDS. Instead, it reports the length of the exon.

            Instead, IGB should report the start, end, strand, length of the item I have selected, not the parent.

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                is blocked by

                Task - A task that needs to be done. BUG-657 'Selecting' bugs including Edge-match

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r14976-14979.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r14976-14979.
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  the start and end numbers are presented comma-separated. The new cds numbers are NOT - make them comma separated as well please.

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                  alyssa Alyssa Gulledge (Inactive) added a comment - the start and end numbers are presented comma-separated. The new cds numbers are NOT - make them comma separated as well please.
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r14985-14987.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r14985-14987.
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  now the length of CDS is missing from the individual exons, although it is correct for the full length model.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - now the length of CDS is missing from the individual exons, although it is correct for the full length model.
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Cds start/end is property of the whole model.
                  In case of exon cds start/end is same as start and end of exon.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Cds start/end is property of the whole model. In case of exon cds start/end is same as start and end of exon.
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  What about the "mixed" exons - the end exons where you can select either the CDS/thick section OR the UTR/thin section... the thin section (which is generally the WHOLE exon) ALSO contains the CDS start/stop within it - I think that is what Ann was talking about. If you select thick, then yes, start and stop covers both, but selecting the thing should give full length AND CDS length.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - What about the "mixed" exons - the end exons where you can select either the CDS/thick section OR the UTR/thin section... the thin section (which is generally the WHOLE exon) ALSO contains the CDS start/stop within it - I think that is what Ann was talking about. If you select thick, then yes, start and stop covers both, but selecting the thing should give full length AND CDS length.
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Done in r14988.

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                  hiralv Hiral Vora (Inactive) added a comment - Done in r14988.
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                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed in Mac IGB 7.0.4 (15396)

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                  tkanapar Tarun Santosh (Inactive) added a comment - Passed in Mac IGB 7.0.4 (15396)

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated:
                        Resolved: