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  1. Bug Repository
  2. BUG-828

wrong info for selected item

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            I selected the final CDS in this gene model, but IGB does not report the true length of the CDS. Instead, it reports the length of the exon.

            Instead, IGB should report the start, end, strand, length of the item I have selected, not the parent.

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                Issue Links

                is blocked by

                Task - A task that needs to be done. BUG-657 'Selecting' bugs including Edge-match

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  ann.loraine Ann Loraine created issue -
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r14976-14979.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r14976-14979.
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  the start and end numbers are presented comma-separated. The new cds numbers are NOT - make them comma separated as well please.

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                  alyssa Alyssa Gulledge (Inactive) added a comment - the start and end numbers are presented comma-separated. The new cds numbers are NOT - make them comma separated as well please.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r14985-14987.

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                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r14985-14987.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  now the length of CDS is missing from the individual exons, although it is correct for the full length model.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - now the length of CDS is missing from the individual exons, although it is correct for the full length model.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Cds start/end is property of the whole model.
                  In case of exon cds start/end is same as start and end of exon.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Cds start/end is property of the whole model. In case of exon cds start/end is same as start and end of exon.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  What about the "mixed" exons - the end exons where you can select either the CDS/thick section OR the UTR/thin section... the thin section (which is generally the WHOLE exon) ALSO contains the CDS start/stop within it - I think that is what Ann was talking about. If you select thick, then yes, start and stop covers both, but selecting the thing should give full length AND CDS length.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - What about the "mixed" exons - the end exons where you can select either the CDS/thick section OR the UTR/thin section... the thin section (which is generally the WHOLE exon) ALSO contains the CDS start/stop within it - I think that is what Ann was talking about. If you select thick, then yes, start and stop covers both, but selecting the thing should give full length AND CDS length.
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ] Hiral Vora [ hiralv ]
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Done in r14988.

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                  hiralv Hiral Vora (Inactive) added a comment - Done in r14988.
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB 7.1 [ 10240 ] Bug Repository [ 10030 ]
                  Key IGBD-274 BUG-828
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-657 [ BUG-657 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
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                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed in Mac IGB 7.0.4 (15396)

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                  tkanapar Tarun Santosh (Inactive) added a comment - Passed in Mac IGB 7.0.4 (15396)
                  tkanapar Tarun Santosh (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Tarun Santosh [ tkanapar ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated:
                        Resolved: