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  1. Bug Repository
  2. BUG-839

implement Cufflinks GTF parser for IGB 7.0 (as plugin?)

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Please support CuffLinks GTF - this is a pretty important format and would help us get more users if we support it.
            I attach an example.
            Note that some "extra feature" fields are quantitative. It would be good to ensure that these are read in as floats not character strings and that they be available for the "color by score" feature. Note also that individual exons have scores and that the transcript as a whole has a score.
            The attached file (Cufflinks_6K.gtf.gz) and its tabix index is from blueberry genome:
            Vaccinium corymbosum genome versions V_corymbosum_scaffold_May_2013
            Access it via private Loraine Lab RNASeq QL server http://transvar.org/illumina/ using your transvar user name and password.
            I also attach an image showing how the file looks when parsed into IGB.
            Note that CuffLinks probably has a non-standard implementation of GTF. However, the CuffLinks software is very, very widely used and even if the format is non-standard, IGB needs to support it.
            Note that the second field is "Cufflinks" which is one way IGB can tell that the file is Cufflinks GTF.
            Another option would be for the parser to detect that there are "exon" features that are not part of any parent "sim"
            When that happens, IGB could open a window that asks the user about the format what the grouping feature can be.

              Attachments

              1. Cufflinks_6K.gtf.gz
                4.80 MB
                Ann Loraine
              2. Cufflinks_6K.gtf.gz.tbi
                239 kB
                Ann Loraine
              3. GTFinIGB.png
                180 kB
                Ann Loraine

                Issue Links

                relates to

                Task - A task that needs to be done. BUG-622 File format issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r14748.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r14748.
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                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited

                  I do not have the bluebaerry set up as a genome, and I do not have the ref seq. When I drag it in as a custom genome:

                  every scaffold reports as 1000000000

                  If I drag it in the first time, it will load. If I drag it in from scratch the second time (ie make a second custom genome), it will NOT load.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - - edited I do not have the bluebaerry set up as a genome, and I do not have the ref seq. When I drag it in as a custom genome: every scaffold reports as 1000000000 If I drag it in the first time, it will load. If I drag it in from scratch the second time (ie make a second custom genome), it will NOT load.
                  Hide
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Could not reproduce.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Could not reproduce.
                  Hide
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                  tkanapar Tarun Santosh (Inactive) added a comment - - edited

                  I was unable to load the files that are attached .Please look into this
                  It displays the following information
                  "Unable to load data set from the file "

                  The following error was displayed in the console

                  Exception in thread "AWT-EventQueue-3" java.lang.NullPointerException
                  at com.affymetrix.igb.view.load.JTableX.getCellRenderer(DataManagementTable.java:223)
                  at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.paintCell(Unknown Source)
                  at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.a(Unknown Source)
                  at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.paint(Unknown Source)
                  at com.jidesoft.plaf.basic.BasicJideTableUI.paint(Unknown Source)
                  at javax.swing.plaf.ComponentUI.update(ComponentUI.java:153)
                  at javax.swing.JComponent.paintComponent(JComponent.java:760)
                  at javax.swing.JComponent.paint(JComponent.java:1037)
                  at javax.swing.JComponent.paintChildren(JComponent.java:870)
                  at javax.swing.JComponent.paint(JComponent.java:1046)
                  at javax.swing.JViewport.paint(JViewport.java:795)
                  at javax.swing.JComponent.paintChildren(JComponent.java:870)
                  at javax.swing.JComponent.paint(JComponent.java:1046)
                  at javax.swing.JComponent.paintChildren(JComponent.java:870)
                  at javax.swing.JComponent.paint(JComponent.java:1046)
                  at javax.swing.JComponent.paintChildren(JComponent.java:870)
                  at javax.swing.JSplitPane.paintChildren(JSplitPane.java:1030)
                  at javax.swing.JComponent.paint(JComponent.java:1046)
                  at javax.swing.JComponent.paintChildren(JComponent.java:870)
                  at javax.swing.JComponent.paint(JComponent.java:1046)
                  at javax.swing.JComponent.paintChildren(JComponent.java:870)
                  at javax.swing.JComponent.paint(JComponent.java:1046)
                  at javax.swing.JComponent.paintChildren(JComponent.java:870)
                  at javax.swing.JSplitPane.paintChildren(JSplitPane.java:1030)
                  at javax.swing.JComponent.paint(JComponent.java:1046)
                  at javax.swing.JComponent._paintImmediately(JComponent.java:5106)
                  at javax.swing.JComponent.paintImmediately(JComponent.java:4890)
                  at javax.swing.RepaintManager$3.run(RepaintManager.java:814)
                  at javax.swing.RepaintManager$3.run(RepaintManager.java:802)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
                  at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:802)
                  at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:745)
                  at javax.swing.RepaintManager.prePaintDirtyRegions(RepaintManager.java:725)
                  at javax.swing.RepaintManager.access$1000(RepaintManager.java:46)
                  at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1680)
                  at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
                  at java.awt.EventQueue.access$400(EventQueue.java:82)
                  at java.awt.EventQueue$2.run(EventQueue.java:676)
                  at java.awt.EventQueue$2.run(EventQueue.java:674)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:205)
                  at java.awt.Dialog$1.run(Dialog.java:1049)
                  at java.awt.Dialog$3.run(Dialog.java:1101)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.awt.Dialog.show(Dialog.java:1099)
                  at javax.swing.JOptionPane.showOptionDialog(JOptionPane.java:853)
                  at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:650)
                  at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:621)
                  at com.affymetrix.igb.Application.infoPanel(Application.java:234)
                  at com.affymetrix.igb.view.load.GeneralLoadUtils$5.finished(GeneralLoadUtils.java:1323)
                  at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:41)
                  at javax.swing.SwingWorker$5.run(SwingWorker.java:717)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:814)
                  at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:95)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:824)
                  at javax.swing.Timer.fireActionPerformed(Timer.java:291)
                  at javax.swing.Timer$DoPostEvent.run(Timer.java:221)
                  at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
                  at java.awt.EventQueue.access$400(EventQueue.java:82)
                  at java.awt.EventQueue$2.run(EventQueue.java:676)
                  at java.awt.EventQueue$2.run(EventQueue.java:674)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
                  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
                  Exception in thread "AWT-EventQueue-3" java.lang.NullPointerException
                  at com.affymetrix.igb.view.load.JTableX.getCellRenderer(DataManagementTable.java:223)
                  at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.paintCell(Unknown Source)
                  at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.a(Unknown Source)
                  at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.paint(Unknown Source)
                  at com.jidesoft.plaf.basic.BasicJideTableUI.paint(Unknown Source)
                  at javax.swing.plaf.ComponentUI.update(ComponentUI.java:153)
                  at javax.swing.JComponent.paintComponent(JComponent.java:760)
                  at javax.swing.JComponent.paint(JComponent.java:1037)
                  at javax.swing.JComponent.paintChildren(JComponent.java:870)
                  at javax.swing.JComponent.paint(JComponent.java:1046)
                  at javax.swing.JViewport.paint(JViewport.java:795)
                  at javax.swing.JComponent.paintChildren(JComponent.java:870)
                  at javax.swing.JComponent.paint(JComponent.java:1046)
                  at javax.swing.JComponent._paintImmediately(JComponent.java:5106)
                  at javax.swing.JComponent.paintImmediately(JComponent.java:4890)
                  at javax.swing.RepaintManager$3.run(RepaintManager.java:814)
                  at javax.swing.RepaintManager$3.run(RepaintManager.java:802)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
                  at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:802)
                  at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:745)
                  at javax.swing.RepaintManager.prePaintDirtyRegions(RepaintManager.java:725)
                  at javax.swing.RepaintManager.access$1000(RepaintManager.java:46)
                  at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1680)
                  at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
                  at java.awt.EventQueue.access$400(EventQueue.java:82)
                  at java.awt.EventQueue$2.run(EventQueue.java:676)
                  at java.awt.EventQueue$2.run(EventQueue.java:674)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:205)
                  at java.awt.Dialog$1.run(Dialog.java:1049)
                  at java.awt.Dialog$3.run(Dialog.java:1101)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.awt.Dialog.show(Dialog.java:1099)
                  at javax.swing.JOptionPane.showOptionDialog(JOptionPane.java:853)
                  at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:650)
                  at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:621)
                  at com.affymetrix.igb.Application.infoPanel(Application.java:234)
                  at com.affymetrix.igb.view.load.GeneralLoadUtils$5.finished(GeneralLoadUtils.java:1323)
                  at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:41)
                  at javax.swing.SwingWorker$5.run(SwingWorker.java:717)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:814)
                  at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:95)
                  at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:824)
                  at javax.swing.Timer.fireActionPerformed(Timer.java:291)
                  at javax.swing.Timer$DoPostEvent.run(Timer.java:221)
                  at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209)
                  at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715)
                  at java.awt.EventQueue.access$400(EventQueue.java:82)
                  at java.awt.EventQueue$2.run(EventQueue.java:676)
                  at java.awt.EventQueue$2.run(EventQueue.java:674)
                  at java.security.AccessController.doPrivileged(Native Method)
                  at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86)
                  at java.awt.EventQueue.dispatchEvent(EventQueue.java:685)
                  at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296)
                  at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211)
                  at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196)
                  at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188)
                  at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)

                  Show
                  tkanapar Tarun Santosh (Inactive) added a comment - - edited I was unable to load the files that are attached .Please look into this It displays the following information "Unable to load data set from the file " The following error was displayed in the console Exception in thread "AWT-EventQueue-3" java.lang.NullPointerException at com.affymetrix.igb.view.load.JTableX.getCellRenderer(DataManagementTable.java:223) at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.paintCell(Unknown Source) at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.a(Unknown Source) at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.paint(Unknown Source) at com.jidesoft.plaf.basic.BasicJideTableUI.paint(Unknown Source) at javax.swing.plaf.ComponentUI.update(ComponentUI.java:153) at javax.swing.JComponent.paintComponent(JComponent.java:760) at javax.swing.JComponent.paint(JComponent.java:1037) at javax.swing.JComponent.paintChildren(JComponent.java:870) at javax.swing.JComponent.paint(JComponent.java:1046) at javax.swing.JViewport.paint(JViewport.java:795) at javax.swing.JComponent.paintChildren(JComponent.java:870) at javax.swing.JComponent.paint(JComponent.java:1046) at javax.swing.JComponent.paintChildren(JComponent.java:870) at javax.swing.JComponent.paint(JComponent.java:1046) at javax.swing.JComponent.paintChildren(JComponent.java:870) at javax.swing.JSplitPane.paintChildren(JSplitPane.java:1030) at javax.swing.JComponent.paint(JComponent.java:1046) at javax.swing.JComponent.paintChildren(JComponent.java:870) at javax.swing.JComponent.paint(JComponent.java:1046) at javax.swing.JComponent.paintChildren(JComponent.java:870) at javax.swing.JComponent.paint(JComponent.java:1046) at javax.swing.JComponent.paintChildren(JComponent.java:870) at javax.swing.JSplitPane.paintChildren(JSplitPane.java:1030) at javax.swing.JComponent.paint(JComponent.java:1046) at javax.swing.JComponent._paintImmediately(JComponent.java:5106) at javax.swing.JComponent.paintImmediately(JComponent.java:4890) at javax.swing.RepaintManager$3.run(RepaintManager.java:814) at javax.swing.RepaintManager$3.run(RepaintManager.java:802) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86) at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:802) at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:745) at javax.swing.RepaintManager.prePaintDirtyRegions(RepaintManager.java:725) at javax.swing.RepaintManager.access$1000(RepaintManager.java:46) at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1680) at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715) at java.awt.EventQueue.access$400(EventQueue.java:82) at java.awt.EventQueue$2.run(EventQueue.java:676) at java.awt.EventQueue$2.run(EventQueue.java:674) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86) at java.awt.EventQueue.dispatchEvent(EventQueue.java:685) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:205) at java.awt.Dialog$1.run(Dialog.java:1049) at java.awt.Dialog$3.run(Dialog.java:1101) at java.security.AccessController.doPrivileged(Native Method) at java.awt.Dialog.show(Dialog.java:1099) at javax.swing.JOptionPane.showOptionDialog(JOptionPane.java:853) at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:650) at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:621) at com.affymetrix.igb.Application.infoPanel(Application.java:234) at com.affymetrix.igb.view.load.GeneralLoadUtils$5.finished(GeneralLoadUtils.java:1323) at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:41) at javax.swing.SwingWorker$5.run(SwingWorker.java:717) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:814) at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:95) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:824) at javax.swing.Timer.fireActionPerformed(Timer.java:291) at javax.swing.Timer$DoPostEvent.run(Timer.java:221) at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715) at java.awt.EventQueue.access$400(EventQueue.java:82) at java.awt.EventQueue$2.run(EventQueue.java:676) at java.awt.EventQueue$2.run(EventQueue.java:674) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86) at java.awt.EventQueue.dispatchEvent(EventQueue.java:685) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122) Exception in thread "AWT-EventQueue-3" java.lang.NullPointerException at com.affymetrix.igb.view.load.JTableX.getCellRenderer(DataManagementTable.java:223) at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.paintCell(Unknown Source) at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.a(Unknown Source) at com.jidesoft.plaf.basic.BasicJideTableUIDelegate.paint(Unknown Source) at com.jidesoft.plaf.basic.BasicJideTableUI.paint(Unknown Source) at javax.swing.plaf.ComponentUI.update(ComponentUI.java:153) at javax.swing.JComponent.paintComponent(JComponent.java:760) at javax.swing.JComponent.paint(JComponent.java:1037) at javax.swing.JComponent.paintChildren(JComponent.java:870) at javax.swing.JComponent.paint(JComponent.java:1046) at javax.swing.JViewport.paint(JViewport.java:795) at javax.swing.JComponent.paintChildren(JComponent.java:870) at javax.swing.JComponent.paint(JComponent.java:1046) at javax.swing.JComponent._paintImmediately(JComponent.java:5106) at javax.swing.JComponent.paintImmediately(JComponent.java:4890) at javax.swing.RepaintManager$3.run(RepaintManager.java:814) at javax.swing.RepaintManager$3.run(RepaintManager.java:802) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86) at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:802) at javax.swing.RepaintManager.paintDirtyRegions(RepaintManager.java:745) at javax.swing.RepaintManager.prePaintDirtyRegions(RepaintManager.java:725) at javax.swing.RepaintManager.access$1000(RepaintManager.java:46) at javax.swing.RepaintManager$ProcessingRunnable.run(RepaintManager.java:1680) at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715) at java.awt.EventQueue.access$400(EventQueue.java:82) at java.awt.EventQueue$2.run(EventQueue.java:676) at java.awt.EventQueue$2.run(EventQueue.java:674) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86) at java.awt.EventQueue.dispatchEvent(EventQueue.java:685) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:205) at java.awt.Dialog$1.run(Dialog.java:1049) at java.awt.Dialog$3.run(Dialog.java:1101) at java.security.AccessController.doPrivileged(Native Method) at java.awt.Dialog.show(Dialog.java:1099) at javax.swing.JOptionPane.showOptionDialog(JOptionPane.java:853) at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:650) at javax.swing.JOptionPane.showMessageDialog(JOptionPane.java:621) at com.affymetrix.igb.Application.infoPanel(Application.java:234) at com.affymetrix.igb.view.load.GeneralLoadUtils$5.finished(GeneralLoadUtils.java:1323) at com.affymetrix.genometryImpl.thread.CThreadWorker.done(CThreadWorker.java:41) at javax.swing.SwingWorker$5.run(SwingWorker.java:717) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.run(SwingWorker.java:814) at sun.swing.AccumulativeRunnable.run(AccumulativeRunnable.java:95) at javax.swing.SwingWorker$DoSubmitAccumulativeRunnable.actionPerformed(SwingWorker.java:824) at javax.swing.Timer.fireActionPerformed(Timer.java:291) at javax.swing.Timer$DoPostEvent.run(Timer.java:221) at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:209) at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:715) at java.awt.EventQueue.access$400(EventQueue.java:82) at java.awt.EventQueue$2.run(EventQueue.java:676) at java.awt.EventQueue$2.run(EventQueue.java:674) at java.security.AccessController.doPrivileged(Native Method) at java.security.AccessControlContext$1.doIntersectionPrivilege(AccessControlContext.java:86) at java.awt.EventQueue.dispatchEvent(EventQueue.java:685) at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:296) at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:211) at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:201) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:196) at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:188) at java.awt.EventDispatchThread.run(EventDispatchThread.java:122)
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  I had no problems - none of the reported problems appeared v. 15424, so closing this issue.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - I had no problems - none of the reported problems appeared v. 15424, so closing this issue.

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated:
                        Resolved: