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  1. Bug Repository
  2. BUG-841

Starting error for version 14295 "Invalid regex in annots.xml"

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            Starting "Integrated Genome Browser 7.0.1 (14295) "
            UserAgent: IGB/7.0.1 (14295) ; Mac OS X/10.7.5 (x86_64); en_US;
            Java version: 1.7.0_17 from Oracle Corporation
            Locale: en_US
            System memory: 1864192
            arguments: -prefs http://eos.transvar.org/igb//igb_prefs.xml

            DAS server version: , status:
            DAS capabilities:
            Initializing http://bioviz.org/das2/genome
            Initializing http://igbquickload.org/das2/genome

            -------------------------------------------------------
            Invalid annots.xml file: QuickLoad Server http://igbquickload.org/quickload/ has an invalid annotations (annots.xml) file for A_thaliana_Jun_2009: InvalidRegex: Pattern value '((W|w)hole (S|s))equence)' is not a valid regular expression. The reported error was: 'Can't find resource for bundle java.util.PropertyResourceBundle, key parser.factor.0' at column '

            {2}

            '.. Please contact the server administrators or the IGB development team to let us know about the problem.
            -------------------------------------------------------

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                relates to

                Task - A task that needs to be done. BUG-689 IGB start up and Help menu issues

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Fixed in 14297.

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                  fwang4 Fuquan Wang (Inactive) added a comment - Fixed in 14297.
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  I am guessing that this was a successful test of IGBD-153 ?

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - I am guessing that this was a successful test of IGBD-153 ?
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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Yes, but this is only one test case for the 'load_hint'.

                  Guess we want to test more to make sure each field are validated correctly, I have uploaded a format specification document in IGBD-153 for your convenience.

                  If no error any more for this issue, may we close it?

                  Show
                  fwang4 Fuquan Wang (Inactive) added a comment - Yes, but this is only one test case for the 'load_hint'. Guess we want to test more to make sure each field are validated correctly, I have uploaded a format specification document in IGBD-153 for your convenience. If no error any more for this issue, may we close it?
                  Hide
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  not showing up as an error anymore, so this issue is being closed

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - not showing up as an error anymore, so this issue is being closed
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                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed in Mac IGB 7.0.4 (15396)

                  Show
                  tkanapar Tarun Santosh (Inactive) added a comment - Passed in Mac IGB 7.0.4 (15396)

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: