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  1. Bug Repository
  2. BUG-874

Black background for unloaded data area

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            We found this bug during the WiNGS workshop but cannot reproduce constantly.

            Most likely it was related to 'Clamp to View' and 'Lock Track Height(Pixels)', as one time we loaded the 2 tracks from attached bookmark:

            1. Lock one of them
            2. Select Clamp to View
            3. Unlock the one in step #1
            4. Lock the other track
            5. Unselect Clamp to View
            6. Zoom out

            Then we observed the unloaded data area background changed to black (originally gray).

            Please play with these 2 tracks on lock & clamp to see if you reproduce this bug constantly.

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                is blocked by

                Task - A task that needs to be done. BUG-647 Server bugs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  this only loaded one track. Please adjust bookmark link or add a second to get second track in

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - this only loaded one track. Please adjust bookmark link or add a second to get second track in
                  Hide
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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  Added as bookmark file.

                  Show
                  fwang4 Fuquan Wang (Inactive) added a comment - Added as bookmark file.
                  Hide
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  Ok - the black background ONLY happens to tracks with Load Mode of "genome". If you delete and reload TAIR10 with load mode set to Manual, it doesn't do this blackout thing. But if you then change it to genome, it shows the bug.

                  Also, the initial lock is unnecessary, as are most of those tracks.

                  To reproduce:
                  1. Open A thal. Allow refGene to load (auto set to "genome")
                  2. Zoom in and load in any second track (leave as "manual")
                  3. set clamp to view. Set a lock on either track while clamp to view is on.
                  4. Take off clamp to view, and zoom out. See that any track set to "genome" turns black.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - Ok - the black background ONLY happens to tracks with Load Mode of "genome". If you delete and reload TAIR10 with load mode set to Manual, it doesn't do this blackout thing. But if you then change it to genome, it shows the bug. Also, the initial lock is unnecessary, as are most of those tracks. To reproduce: 1. Open A thal. Allow refGene to load (auto set to "genome") 2. Zoom in and load in any second track (leave as "manual") 3. set clamp to view. Set a lock on either track while clamp to view is on. 4. Take off clamp to view, and zoom out. See that any track set to "genome" turns black.
                  Hide
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                  fwang4 Fuquan Wang (Inactive) added a comment -

                  An easier way is:

                  1. Load a BED track at any zoom in level (not necessary to be whole genome)
                  2. Zoom in a little and clamp to view
                  3. Lock this track and un-clamp to view

                  Show
                  fwang4 Fuquan Wang (Inactive) added a comment - An easier way is: 1. Load a BED track at any zoom in level (not necessary to be whole genome) 2. Zoom in a little and clamp to view 3. Lock this track and un-clamp to view
                  Hide
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed in r14306.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed in r14306.
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                  hiralv Hiral Vora (Inactive) added a comment -

                  Fixed for v7.0 in r14313.

                  Show
                  hiralv Hiral Vora (Inactive) added a comment - Fixed for v7.0 in r14313.
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  passes on branch; tested by all of the above methods, and no incorrect behavior.

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - passes on branch; tested by all of the above methods, and no incorrect behavior.
                  Hide
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                  tkanapar Tarun Santosh (Inactive) added a comment -

                  Passed in Mac IGB 7.0.4 (15396)

                  Show
                  tkanapar Tarun Santosh (Inactive) added a comment - Passed in Mac IGB 7.0.4 (15396)

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: