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  1. Bug Repository
  2. BUG-88

Selectable leftmost object in depth graph can be made to show genomic sequence

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None
          • Environment:

            OS X: 10.6
            Java: "1.6.0_24"
            IGB: Svn version 7791

            Description

            Steps to reproduce:
            Load Arabidopsis thaliana version 'A_thaliana_Jun_2009'.
            Right click on a track (+ or ) and chose "Make Annotation Depth Graph">"Tair10 mRNA (+/-)"

            The generated depth graph has an object at the left most portion of the view. It is selectable and if the user clicks "Show genomic sequence" the UI will freeze. Eventually, the sequence viewer will show up with nulls as the titles.

              Attachments

                Issue Links

                is blocked by

                Task - A task that needs to be done. BUG-639 IGB generated graphs

                • Blocker - Blocks development and/or testing work, production could not run.
                • Closed

                  Activity

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                  adam Adam Baxter (Inactive) created issue -
                  hiralv Hiral Vora (Inactive) made changes -
                  Field Original Value New Value
                  Assignee Hiral Vora [ hiralv ] vikram bishnoi [ vbishnoi ]
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  The same 'object' occurs in the mismatch graph. Right clicking the object opens a menu offering you to 'center at zoom stripe' 'select parent' and 'View in sequence viewer'. Either the object needs to be removed, or the right click menu needs to be disabled AND the 'view seq...' needs to be disabled in the VIEW dropdown menu

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - The same 'object' occurs in the mismatch graph. Right clicking the object opens a menu offering you to 'center at zoom stripe' 'select parent' and 'View in sequence viewer'. Either the object needs to be removed, or the right click menu needs to be disabled AND the 'view seq...' needs to be disabled in the VIEW dropdown menu
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Assignee vikram bishnoi [ vbishnoi ] Hiral Vora [ hiralv ]
                  hiralv Hiral Vora (Inactive) made changes -
                  Assignee Hiral Vora [ hiralv ] vikram bishnoi [ vbishnoi ]
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                  vbishnoi vbishnoi added a comment -

                  This has been fixed now.
                  The option has been removed from the menu.

                  Show
                  vbishnoi vbishnoi added a comment - This has been fixed now. The option has been removed from the menu.
                  vbishnoi vbishnoi made changes -
                  Assignee vikram bishnoi [ vbishnoi ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Project IGB6.5 [ 10010 ] Bug Repository [ 10030 ]
                  Key IGB-108 BUG-88
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  david David Norris (Inactive) made changes -
                  Assignee Alyssa Gulledge [ alyssa ]
                  david David Norris (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]
                  david David Norris (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Katharine Kubiak [ kkubiak ]
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                  kkubiak Katharine Kubiak (Inactive) added a comment -

                  Passed v9871 Windows

                  Show
                  kkubiak Katharine Kubiak (Inactive) added a comment - Passed v9871 Windows
                  kkubiak Katharine Kubiak (Inactive) made changes -
                  Assignee Katharine Kubiak [ kkubiak ] Anuj Puram [ anuj ]
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                  anuj Anuj Puram (Inactive) added a comment -

                  Passed 6.7.0 (9891) on Mac

                  Show
                  anuj Anuj Puram (Inactive) added a comment - Passed 6.7.0 (9891) on Mac
                  anuj Anuj Puram (Inactive) made changes -
                  Assignee Anuj Puram [ anuj ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Alyssa Gulledge [ alyssa ]
                  Resolution Fixed [ 1 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Resolved [ 5 ] Closed [ 6 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Hide
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                  alyssa Alyssa Gulledge (Inactive) added a comment -

                  originally reported by Adam Baxter

                  Show
                  alyssa Alyssa Gulledge (Inactive) added a comment - originally reported by Adam Baxter
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Reporter Adam Baxter [ adam ] Alyssa Gulledge [ alyssa ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Closed [ 6 ] Reopened [ 4 ]
                  Assignee Vineeth Mylapur [ smylapur ]
                  Hide
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                  smylapur Vineeth Mylapur (Inactive) added a comment -

                  Passed 7.0 v(11908) Windows

                  Show
                  smylapur Vineeth Mylapur (Inactive) added a comment - Passed 7.0 v(11908) Windows
                  smylapur Vineeth Mylapur (Inactive) made changes -
                  Status Reopened [ 4 ] Resolved [ 5 ]
                  Assignee Vineeth Mylapur [ smylapur ]
                  Resolution Fixed [ 1 ]
                  richard Richard Linchangco (Inactive) made changes -
                  Resolution Fixed [ 1 ]
                  Status Resolved [ 5 ] Reopened [ 4 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-638 [ BUG-638 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-639 [ BUG-639 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Link This issue is blocked by BUG-638 [ BUG-638 ]
                  alyssa Alyssa Gulledge (Inactive) made changes -
                  Status Reopened [ 4 ] Closed [ 6 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      Unassigned
                      Reporter:
                      alyssa Alyssa Gulledge (Inactive)
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                      Dates

                      • Created:
                        Updated:
                        Resolved: