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  1. Deep Backlog
  2. DB-103

ProtAnnot Improvements

          Details

          • Story Points:
            2

            Description

            This story will hold comments for improvements on the ProtAnnot plugin. See comments below for specific improvement ideas.

              Attachments

              1.
              		 Allow users to change nucleotide colors In ProtAnnot Preferences Sub-task Closed Mason Meyer (Inactive)
               
              2.
              		 Reorder Prot Annot's Color Preferences for better organization. Sub-task Closed Mason Meyer (Inactive)
               
              3.
              		 Enhance tooltips for ProtAnnot Sub-task Closed Mason Meyer (Inactive)
               
              4.
              		 The InterProScan link in the InterProScan Job Configuration box should link to the "About InterProScan" page Sub-task Closed Mason Meyer (Inactive)
               
              5.
              		 InterProScan Tab Sub-task Closed Mason Meyer (Inactive)
               
              6.
              		 We should show an arrow on each intron in ProtAnnot to let users know that the direction of translation is displayed from left to right. Sub-task Closed Mason Meyer (Inactive)
               
              7.
              		 We should make the UTR blocks in ProtAnnot shorter so that the gene models look more like they do in IGB. Sub-task Closed Mason Meyer (Inactive)
               
              8.
              		 We should move the horizontal zoom slider in the ProtAnnot plugin to the top of the plugin and the vertical zoom slider to the left. This will keep the UI more consistent with IGB's UI. Sub-task Closed Mason Meyer (Inactive)
               
              9.
              		 Allow mutliple ProtAnnot windows. If ProtAnnot is open and you Start ProtAnnot with a different transcript in IGB a new ProtAnnot window should open. Sub-task Closed Mason Meyer (Inactive)
               
              10.
              		 Save InterProScan selections on invalid email Sub-task Closed Mason Meyer (Inactive)
               
              11.
              		 Don't change focus on every InterProScan tab refresh Sub-task Closed Mason Meyer (Inactive)
               
              12.
              		 Change focus to property tab when the gene model is selected Sub-task Closed Mason Meyer (Inactive)
               
              13.
              		 Display gene models that do not have a cds start and end Sub-task Closed Mason Meyer (Inactive)
               
              14. Change barb wire to single arrow Sub-task Closed Tarun Mall (Inactive)
               
              15.
              		 Restrict zoomer Sub-task Closed Mason Meyer (Inactive)
               
              16.
              		 Add labels for gene models and ips result spans Sub-task Closed Mason Meyer (Inactive)
               
              17.
              		 Add end direction triangle to protannot gene models Sub-task Closed Mason Meyer (Inactive)
               
              18.
              		 Filter the protannot plugin versions in 8.5 so that the optional plugin does not show Sub-task Closed David Norris (Inactive)
               
              19.
              		 Change protannot title Sub-task Closed Mason Meyer (Inactive)
               
              20.
              		 Change "Open Browser" to "Open Web Browser" in context menu Sub-task Closed Mason Meyer (Inactive)
               
              21.
              		 Use rest api for urls to ips Sub-task Closed Mason Meyer (Inactive)
               
              22.
              		 Research if ips descriptions are available in a rest api Sub-task Closed John Eckstein (Inactive)
               
              23.
              		 Compare signature description and ac with entry Sub-task Closed John Eckstein (Inactive)
               
              24.
              		 Add "Run InterProScan" button to Interproscan tab Sub-task Closed Mason Meyer (Inactive)
               
              25.
              		 Change "Load Interproscan" to "Run InterProScan" Sub-task Closed Mason Meyer (Inactive)
               
              26.
              		 Remove InterProScan modal Sub-task Closed Mason Meyer (Inactive)
               

                Activity

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                dcnorris David Norris (Inactive) created issue -
                dcnorris David Norris (Inactive) made changes -
                Field Original Value New Value
                Sprint Sprint 24 [ 31 ]
                dcnorris David Norris (Inactive) made changes -
                Rank Ranked higher
                mason Mason Meyer (Inactive) made changes -
                Description This story will hold comments for improvements on the ProtAnnot plugin. See comments below for specific improvement ideas.
                mason Mason Meyer (Inactive) made changes -
                Summary Protannot Improvements ProtAnnot Improvements
                dcnorris David Norris (Inactive) made changes -
                Sprint Sprint 24 [ 31 ] Sprint 25 [ 32 ]
                dcnorris David Norris (Inactive) made changes -
                Rank Ranked higher
                dcnorris David Norris (Inactive) made changes -
                Rank Ranked higher
                dcnorris David Norris (Inactive) made changes -
                Rank Ranked lower
                dcnorris David Norris (Inactive) made changes -
                Rank Ranked lower
                dcnorris David Norris (Inactive) made changes -
                Story Points 3 2
                dcnorris David Norris (Inactive) made changes -
                Sprint Sprint 25 [ 32 ]
                dcnorris David Norris (Inactive) made changes -
                Sprint Sprint 26 [ 34 ]
                dcnorris David Norris (Inactive) made changes -
                Rank Ranked higher
                jeckstein John Eckstein (Inactive) made changes -
                Labels ProtAnnot
                jeckstein John Eckstein (Inactive) made changes -
                Sprint Sprint 26 [ 34 ]
                jeckstein John Eckstein (Inactive) made changes -
                Rank Ranked lower
                mason Mason Meyer (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Open [ 1 ] Closed [ 6 ]
                mason Mason Meyer (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Closed [ 6 ] Open [ 1 ]
                mason Mason Meyer (Inactive) made changes -
                Project IGB [ 10840 ] Deep Backlog [ 11041 ]
                Key IGBF-811 DB-103
                Workflow Loraine Lab Workflow [ 16119 ] jira [ 16810 ]
                nfreese Nowlan Freese made changes -
                Status Open [ 1 ] Closed [ 6 ]

                  People

                  • Assignee:
                    tmall Tarun Mall (Inactive)
                    Reporter:
                    dcnorris David Norris (Inactive)
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated: