Details
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Type:
Sub-task
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Labels:None
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Status | Open [ 1 ] | Pull Request Submitted [ 10101 ] |
| Status | Pull Request Submitted [ 10101 ] | Needs Testing [ 10002 ] |
| Assignee | Tarun Mall [ tmall ] | Mason Meyer [ mason ] |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
| Status | Testing In Progress [ 10003 ] | Needs Testing [ 10002 ] |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
| Assignee | Mason Meyer [ mason ] | John Eckstein [ jeckstein ] |
| Attachment | Span1of.PNG [ 13160 ] | |
| Attachment | Span1ofProblem.PNG [ 13161 ] |
| Status | Testing In Progress [ 10003 ] | Open [ 1 ] |
Also, the labels that are placed into ProtAnnot seem to be invisible during the general workflow of using ProtAnnot. This is probably due to there not being enough space to draw the label but we should examine ways to fix this so these labels are more useful to the user.
| Status | Open [ 1 ] | Needs Testing [ 10002 ] |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
| Assignee | John Eckstein [ jeckstein ] | Mason Meyer [ mason ] |
| Status | Testing In Progress [ 10003 ] | Needs Testing [ 10002 ] |
| Status | Needs Testing [ 10002 ] | Testing In Progress [ 10003 ] |
Testing for this issue included verifying that PA gene models and IPS result spans contained valid labels. There was a small problem which is being tracked in IGBF-898 but since this issue has been implemented as expected the story will now be closed.
| Resolution | Done [ 10000 ] | |
| Status | Testing In Progress [ 10003 ] | Closed [ 6 ] |
on 8.4.2 I have found some spans that have labels that are cut off (ex: "Span 1 of").
To examine this problem you may want to look at a gene id "NM_001144822" under the human genome (Chr1).
View the attached screenshots to help visualize the problem.
To reproduce:
1) Start ProtAnnot for the gene outlined above (NM_001144822).
2) Run "TMHMM" under InterProScan.
*Observe:
Some of the spans (as seen in the screenshots) just say "Span 1 of".