Details
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Type: Bug
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Epic Link:
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Sprint:Sprint 27
Description
Some IPS result spans may have labels that are cut off (ex: "Span 1 of").
To examine this problem you may want to look at a gene id "NM_001144822" under the human genome (Chr1).
View the attached screenshots to help visualize the problem.
To reproduce:
1) Start ProtAnnot for the gene outlined above (NM_001144822).
2) Run "TMHMM" under InterProScan.
*Observe:
Some of the spans (as seen in the screenshots) just say "Span 1 of".
Attachments
Issue Links
- relates to
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DB-119 Add labels for gene models and ips result spans
- Closed
Testing for this issue included:
1) Verifying that "Span 1 of" is removed for spans that do not contain a full statement.
2) Verify that the label reads the correct name of the span based on the XML file or it uses the "ac" field if no name is given.
3) Verifying that no other label information was affected when fixing this issue.
Since this issue is resolved it will now be closed.