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  1. Deep Backlog
  2. DB-130

Edge-matching is being randomly selective (for Fruit Fly Gene Model)

          Details

          • Type: Bug
          • Status: Open (View Workflow)
          • Priority: Major
          • Resolution: Unresolved
          • Labels:
            None

            Description

            *Version noticed: 8.2.0

            THIS ISSUE WAS ONLY NOTICED FOR 1 GENE ONLY SO FAR!
            (but still, what is it about this gene that causes the edge-matching to display inappropriately?)

            *From Ivory:
            IGB is being randomly selective about what edges to highlight.
            See attached images EdgeMapA and B. Depending on which feature is selected, the edge mapping indicates that only some of the exons shown are the same (A) or that all exons shown are the same (B).

            To see more instances of inconsistent edge matching in a case where you would really want to be able to use edge mapping, see this region: 3R:21,350,072-21,378,314
            In the latest fruit fly genome (Drosophila melanogaster).

              Attachments

                Issue Links

                relates to

                Task - A task that needs to be done. DB-158 Resolve Fruit Fly gene annotations issues

                • Major - Major loss of function.
                • Open

                Task - A task that needs to be done. IGBF-259 Add D. melanogaster (Release 6) genome annotations to IGBQuickLoad

                • Major - Major loss of function.
                • Closed

                  Activity

                  Ascending order - Click to sort in descending order
                  mason Mason Meyer (Inactive) created issue -
                  mason Mason Meyer (Inactive) made changes -
                  Field Original Value New Value
                  Summary Edge-matching is being randomly selective Edge-matching is being randomly selective
                  mason Mason Meyer (Inactive) made changes -
                  Description *Version noticed: 8.2.0

                  THIS ISSUE WAS ONLY NOTICED FOR 1 GENE!
                  (but still, what is it about this gene that causes the edge-matching to display inappropriately?)

                  *From Ivory:
                  IGB is being randomly selective about what edges to highlight.
                  See attached images EdgeMapA and B. Depending on which feature is selected, the edge mapping indicates that only some of the exons shown are the same (A) or that all exons shown are the same (B).

                  To see more instances of inconsistent edge matching in a case where you would really want to be able to use edge mapping, see this region: 3R:21,350,072-21,378,314
                  In the latest fruit fly genome (Drosophila melanogaster).

                  		*Version noticed: 8.2.0

                  THIS ISSUE WAS ONLY NOTICED FOR 1 GENE ONLY SO FAR!
                  (but still, what is it about this gene that causes the edge-matching to display inappropriately?)

                  *From Ivory:
                  IGB is being randomly selective about what edges to highlight.
                  See attached images EdgeMapA and B. Depending on which feature is selected, the edge mapping indicates that only some of the exons shown are the same (A) or that all exons shown are the same (B).

                  To see more instances of inconsistent edge matching in a case where you would really want to be able to use edge mapping, see this region: 3R:21,350,072-21,378,314
                  In the latest fruit fly genome (Drosophila melanogaster).

                  mason Mason Meyer (Inactive) made changes -
                  Summary Edge-matching is being randomly selective Edge-matching is being randomly selective (for Fruit Fly Gene Model)
                  mason Mason Meyer (Inactive) made changes -
                  Link This issue relates to IGBF-259 [ IGBF-259 ]
                  mason Mason Meyer (Inactive) made changes -
                  Resolution Unresolved [ 10101 ]
                  mason Mason Meyer (Inactive) made changes -
                  Link This issue relates to IGBF-291 [ IGBF-291 ]
                  mason Mason Meyer (Inactive) made changes -
                  Epic Link IGBF-497 [ 15559 ]
                  mason Mason Meyer (Inactive) made changes -
                  Rank Ranked lower
                  mason Mason Meyer (Inactive) made changes -
                  Rank Ranked higher
                  mason Mason Meyer (Inactive) made changes -
                  Rank Ranked higher
                  mason Mason Meyer (Inactive) made changes -
                  Resolution Unresolved [ 10101 ]
                  Status Open [ 1 ] Open [ 1 ]
                  mason Mason Meyer (Inactive) made changes -
                  Project IGB [ 10840 ] Deep Backlog [ 11041 ]
                  Key IGBF-278 DB-130
                  Workflow Loraine Lab Workflow [ 15504 ] jira [ 16837 ]

                    People

                    • Assignee:
                      dcnorris David Norris (Inactive)
                      Reporter:
                      mason Mason Meyer (Inactive)
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                      Dates

                      • Created:
                        Updated: