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  1. Deep Backlog
  2. DB-130

Edge-matching is being randomly selective (for Fruit Fly Gene Model)

    Details

    • Type: Bug
    • Status: Open (View Workflow)
    • Priority: Major
    • Resolution: Unresolved
    • Labels:
      None

      Description

      *Version noticed: 8.2.0

      THIS ISSUE WAS ONLY NOTICED FOR 1 GENE ONLY SO FAR!
      (but still, what is it about this gene that causes the edge-matching to display inappropriately?)

      *From Ivory:
      IGB is being randomly selective about what edges to highlight.
      See attached images EdgeMapA and B. Depending on which feature is selected, the edge mapping indicates that only some of the exons shown are the same (A) or that all exons shown are the same (B).

      To see more instances of inconsistent edge matching in a case where you would really want to be able to use edge mapping, see this region: 3R:21,350,072-21,378,314
      In the latest fruit fly genome (Drosophila melanogaster).

        Attachments

        1. EdgeMapA.png
          72 kB
          Mason Meyer
        2. EdgeMapB.png
          72 kB
          Mason Meyer

          Issue Links

            Activity

            mason Mason Meyer (Inactive) created issue -
            mason Mason Meyer (Inactive) made changes -
            Field Original Value New Value
            Summary Edge-matching is being randomly selective Edge-matching is being randomly selective
            mason Mason Meyer (Inactive) made changes -
            Description *Version noticed: 8.2.0

            THIS ISSUE WAS ONLY NOTICED FOR 1 GENE!
            (but still, what is it about this gene that causes the edge-matching to display inappropriately?)

            *From Ivory:
            IGB is being randomly selective about what edges to highlight.
            See attached images EdgeMapA and B. Depending on which feature is selected, the edge mapping indicates that only some of the exons shown are the same (A) or that all exons shown are the same (B).

            To see more instances of inconsistent edge matching in a case where you would really want to be able to use edge mapping, see this region: 3R:21,350,072-21,378,314
            In the latest fruit fly genome (Drosophila melanogaster).

            *Version noticed: 8.2.0

            THIS ISSUE WAS ONLY NOTICED FOR 1 GENE ONLY SO FAR!
            (but still, what is it about this gene that causes the edge-matching to display inappropriately?)

            *From Ivory:
            IGB is being randomly selective about what edges to highlight.
            See attached images EdgeMapA and B. Depending on which feature is selected, the edge mapping indicates that only some of the exons shown are the same (A) or that all exons shown are the same (B).

            To see more instances of inconsistent edge matching in a case where you would really want to be able to use edge mapping, see this region: 3R:21,350,072-21,378,314
            In the latest fruit fly genome (Drosophila melanogaster).

            mason Mason Meyer (Inactive) made changes -
            Summary Edge-matching is being randomly selective Edge-matching is being randomly selective (for Fruit Fly Gene Model)
            mason Mason Meyer (Inactive) made changes -
            Link This issue relates to IGBF-259 [ IGBF-259 ]
            mason Mason Meyer (Inactive) made changes -
            Resolution Unresolved [ 10101 ]
            mason Mason Meyer (Inactive) made changes -
            Link This issue relates to IGBF-291 [ IGBF-291 ]
            mason Mason Meyer (Inactive) made changes -
            Epic Link IGBF-497 [ 15559 ]
            mason Mason Meyer (Inactive) made changes -
            Rank Ranked lower
            mason Mason Meyer (Inactive) made changes -
            Rank Ranked higher
            mason Mason Meyer (Inactive) made changes -
            Rank Ranked higher
            mason Mason Meyer (Inactive) made changes -
            Resolution Unresolved [ 10101 ]
            Status Open [ 1 ] Open [ 1 ]
            mason Mason Meyer (Inactive) made changes -
            Project IGB [ 10840 ] Deep Backlog [ 11041 ]
            Key IGBF-278 DB-130
            Workflow Loraine Lab Workflow [ 15504 ] jira [ 16837 ]

              People

              • Assignee:
                dcnorris David Norris (Inactive)
                Reporter:
                mason Mason Meyer (Inactive)
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                Dates

                • Created:
                  Updated: