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  1. Deep Backlog
  2. DB-158

Resolve Fruit Fly gene annotations issues

          Details

          • Type: Task
          • Status: Open (View Workflow)
          • Priority: Major
          • Resolution: Unresolved
          • Labels:
            None

            Description

            Ivory found a few issues while testing IGBF-259 that still need to be addressed:

            1) the inclusion of the stop codon as part of the translated region (applies to all genes, does not effect reading frame),

            ...and...

            2) the strand associated with the genes that have the comment:
            SO:0000459:gene_with_trans_spliced_transcript
            Which is a small set (26 genes). And of those, only one gene, FBgn0002781, seems to have any issue, so it may or may not be related to the comment.

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                Issue Links

                relates to

                Bug - A problem which impairs or prevents the functions of the product. DB-130 Edge-matching is being randomly selective (for Fruit Fly Gene Model)

                • Major - Major loss of function.
                • Open

                Task - A task that needs to be done. IGBF-259 Add D. melanogaster (Release 6) genome annotations to IGBQuickLoad

                • Major - Major loss of function.
                • Closed

                  Activity

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                  mason Mason Meyer (Inactive) added a comment -

                  Here is a link to Ivory's notes on this issue from BaseCamp:
                  https://basecamp.com/2734534/projects/7303664/documents/7206320

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                  mason Mason Meyer (Inactive) added a comment - Here is a link to Ivory's notes on this issue from BaseCamp: https://basecamp.com/2734534/projects/7303664/documents/7206320

                    People

                    • Assignee:
                      dcnorris David Norris (Inactive)
                      Reporter:
                      mason Mason Meyer (Inactive)
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                      Dates

                      • Created:
                        Updated: