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  1. Deep Backlog
  2. DB-158

Resolve Fruit Fly gene annotations issues

    Details

    • Type: Task
    • Status: Open (View Workflow)
    • Priority: Major
    • Resolution: Unresolved
    • Labels:
      None

      Description

      Ivory found a few issues while testing IGBF-259 that still need to be addressed:

      1) the inclusion of the stop codon as part of the translated region (applies to all genes, does not effect reading frame),

      ...and...

      2) the strand associated with the genes that have the comment:
      SO:0000459:gene_with_trans_spliced_transcript
      Which is a small set (26 genes). And of those, only one gene, FBgn0002781, seems to have any issue, so it may or may not be related to the comment.

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            mason Mason Meyer (Inactive) created issue -
            mason Mason Meyer (Inactive) made changes -
            Field Original Value New Value
            Link This issue relates to IGBF-259 [ IGBF-259 ]
            mason Mason Meyer (Inactive) made changes -
            Link This issue relates to IGBF-278 [ IGBF-278 ]
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            mason Mason Meyer (Inactive) added a comment -

            Here is a link to Ivory's notes on this issue from BaseCamp:
            https://basecamp.com/2734534/projects/7303664/documents/7206320

            Show
            mason Mason Meyer (Inactive) added a comment - Here is a link to Ivory's notes on this issue from BaseCamp: https://basecamp.com/2734534/projects/7303664/documents/7206320
            mason Mason Meyer (Inactive) made changes -
            Epic Link IGBF-497 [ 15559 ]
            mason Mason Meyer (Inactive) made changes -
            Rank Ranked lower
            mason Mason Meyer (Inactive) made changes -
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            mason Mason Meyer (Inactive) made changes -
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            ann.loraine Ann Loraine made changes -
            Project IGB [ 10840 ] Deep Backlog [ 11041 ]
            Key IGBF-291 DB-158
            Workflow Loraine Lab Workflow [ 15534 ] jira [ 16865 ]

              People

              • Assignee:
                dcnorris David Norris (Inactive)
                Reporter:
                mason Mason Meyer (Inactive)
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                Dates

                • Created:
                  Updated: