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  1. Deep Backlog
  2. DB-159

Load function only loads one BAM file at a time when region in view is >500k

          Details

          • Type: Bug
          • Status: Open (View Workflow)
          • Priority: Major
          • Resolution: Unresolved
          • Labels:
            None

            Description

            REPRODUCE: Open BlueBerry. In the "Available Data" window open /Bluebarry/RNA-Seq Berry Development/SM/Reads/ and select some of the BAM files there. Click "Load Data". You should be challenged with "Region in view is big (>500k), do you want to continue? Click "Yes".

            OBSERVE: IGB will only load one BAM file then stop. You can load the next one by clicking load data again.

            EXPECTATION: This is unexpected behavior since I requested several BAM files and I chose to continue I would expect IGB to load all of them.

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                ann.loraine Ann Loraine added a comment -

                Easier way to reproduce w/o overwhelming memory:

                Launch IGB.
                Select Arabidopsis.
                Open folder Pollen > RNASeq > MM > Reads
                Select Pollen, Seedling 1
                Click Load Data to observe only one track loads.

                Note: this is not a showstopper bug as there is a workaround. Won't fix for 8.1 release.

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                ann.loraine Ann Loraine added a comment - Easier way to reproduce w/o overwhelming memory: Launch IGB. Select Arabidopsis. Open folder Pollen > RNASeq > MM > Reads Select Pollen, Seedling 1 Click Load Data to observe only one track loads. Note: this is not a showstopper bug as there is a workaround. Won't fix for 8.1 release.

                  People

                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    kyle Kyle Suttlemyre (Inactive)
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                    Dates

                    • Created:
                      Updated: