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  1. User Support
  2. HELP-276

Potato genome and transcriptome

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            Description

            Hello, I am ucrrently working on the Solanum tuberosum transcriptome and would be very useful if you have the genome and the transcriptome available to the whole user community.

            Kind Regards,

            Reporter: estela domingo torres
            E-mail: edomingotorres@dundee.ac.uk

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                relates to

                Task - A task that needs to be done. IGBF-1180 Add potato genome to IGB Quickload

                • Major - Major loss of function.
                • Closed

                Task - A task that needs to be done. IGBF-1423 Add potato genome assembly synonyms to IGB species.txt

                • Major - Major loss of function.
                • Closed

                Improvement - An improvement or enhancement to an existing feature or task. IGBF-1420 Add open access potato image to IGB start screen

                • Major - Major loss of function.
                • Closed

                Improvement - An improvement or enhancement to an existing feature or task. IGBF-1421 Add potato genome to IGB Quickload

                • Major - Major loss of function.
                • Closed

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                  support Support (Inactive) created issue -
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                  mason Mason Meyer (Inactive) added a comment -

                  From: Mason Meyer <mmeyer20@uncc.edu>
                  To: Estela Domingo Torres (PG Research) <e.domingotorres@dundee.ac.uk>
                  CC: "Loraine, Ann" <Ann.Loraine@uncc.edu>
                  Date: Fri, Aug 18, 2017 at 7:32 AM
                  Subject: Re: Potato genome and transcriptome

                  Hello Estela,

                  My name is Mason Meyer, IGB Support Specialist. Thank you for taking the time to contact our team with your question. We would be happy to add the Solanum tuberosum transcriptome to IGB!

                  This should not be too hard to setup, but would you mind sending me a link for the genome assembly sequence and also for a GFF (or BED) file with the genome model annotations you'd like to see in IGB?

                  Thanks for your help with this and for bringing this to our attention. I look forward to hearing back from you!

                  Sincerely,

                  Mason Meyer
                  IGB Support Specialist

                  Show
                  mason Mason Meyer (Inactive) added a comment - From: Mason Meyer <mmeyer20@uncc.edu> To: Estela Domingo Torres (PG Research) <e.domingotorres@dundee.ac.uk> CC: "Loraine, Ann" <Ann.Loraine@uncc.edu> Date: Fri, Aug 18, 2017 at 7:32 AM Subject: Re: Potato genome and transcriptome Hello Estela, My name is Mason Meyer, IGB Support Specialist. Thank you for taking the time to contact our team with your question. We would be happy to add the Solanum tuberosum transcriptome to IGB! This should not be too hard to setup, but would you mind sending me a link for the genome assembly sequence and also for a GFF (or BED) file with the genome model annotations you'd like to see in IGB? Thanks for your help with this and for bringing this to our attention. I look forward to hearing back from you! Sincerely, Mason Meyer IGB Support Specialist
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                  mason Mason Meyer (Inactive) added a comment -

                  From: Estela Domingo Torres (PG Research) <e.domingotorres@dundee.ac.uk>
                  To: Mason Meyer <mmeyer20@uncc.edu>
                  CC: "Loraine, Ann" <Ann.Loraine@uncc.edu>
                  Date: Fri, Aug 18, 2017 at 8:32 AM
                  Subject: Re: Potato genome and transcriptome

                  Hello Mason,

                  Thank you very much for your interest.
                  There is the link to the full current database and the GFF file with the transcriptome

                  http://solanaceae.plantbiology.msu.edu/pgsc_download.shtml

                  Many thanks,
                  Estela

                  Show
                  mason Mason Meyer (Inactive) added a comment - From: Estela Domingo Torres (PG Research) <e.domingotorres@dundee.ac.uk> To: Mason Meyer <mmeyer20@uncc.edu> CC: "Loraine, Ann" <Ann.Loraine@uncc.edu> Date: Fri, Aug 18, 2017 at 8:32 AM Subject: Re: Potato genome and transcriptome Hello Mason, Thank you very much for your interest. There is the link to the full current database and the GFF file with the transcriptome http://solanaceae.plantbiology.msu.edu/pgsc_download.shtml Many thanks, Estela
                  mason Mason Meyer (Inactive) made changes -
                  Field Original Value New Value
                  Link This issue relates to IGBF-1180 [ IGBF-1180 ]
                  ann.loraine Ann Loraine made changes -
                  Link This issue relates to IGBF-1420 [ IGBF-1420 ]
                  ann.loraine Ann Loraine made changes -
                  Link This issue relates to IGBF-1421 [ IGBF-1421 ]
                  ann.loraine Ann Loraine made changes -
                  Link This issue relates to IGBF-1423 [ IGBF-1423 ]
                  ann.loraine Ann Loraine made changes -
                  Workflow Loraine Lab Workflow [ 17836 ] Fall 2019 Workflow Update [ 20465 ]
                  ann.loraine Ann Loraine made changes -
                  Workflow Fall 2019 Workflow Update [ 20465 ] Revised Fall 2019 Workflow Update [ 22657 ]
                  Status Open [ 1 ] To-Do [ 10305 ]

                    People

                    • Assignee:
                      ann.loraine Ann Loraine
                      Reporter:
                      support Support (Inactive)
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                      • Created:
                        Updated: