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  1. User Support
  2. HELP-283

Trouble loading custom reference genome

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            Hi! I am trying to load Escherichia coli str. K-12 substr. MG1655, complete genome GenBank: U00096.3 as my reference genome. I can download the genome from NCBI as a genbank (gbk) or a FASTA but IGB will only let me open the genome as a FASTA. When I do this, IGB only displays the nucleotide sequences and not the gene annotations. I see that IGB will allow me to open fna files but I am not sure how to get that file type. Also, I see IGB has Escherichia coli str. K-12 substr. MG1655 from Jan 2012 as a reference but I couldn't find out what version/ GenBank number this was.

            Reporter: Colleen Bianco
            E-mail: cbianco2@illinois.edu

              Attachments

              1. AddChromosmeTXT.png
                AddChromosmeTXT.png
                376 kB
              2. annotations.gb
                4.78 MB
              3. chromosome.txt
                0.0 kB
              4. sequence.fasta
                4.49 MB

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                  • Assignee:
                    ann.loraine Ann Loraine
                    Reporter:
                    support Support (Inactive)
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                    • Created:
                      Updated: