Details
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Type: Bug
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Status: Closed (View Workflow)
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Resolution: Done
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Labels:
Description
Good afternoon!
I'm trying to vizualize a BAM-file from usegalaxy. I used Bowtie for mapping reads (75bp) with default settings and when I zoom it in IGB, I see some blue gaps in reads. Are they mismatches or not?
Thanks in advance!
Reporter: Evgeniy
E-mail: e.bakhmet@incras.ru
From: Evgeniy <e.bakhmet@incras.ru>
Date: Mon, Apr 23, 2018 at 12:53 PM
Subject: Re: Mismatches or not?
To: Mason Meyer <mmeyer20@uncc.edu>
Hello, Mason!
I attached a screenshot with my request before. But now everything is okay. I checked it more carefully - when I zoom to base pairs and click "download sequence" (genome), some blue rectangles is appeared in reads instead of some base pairs, becouse length of base pairs of reads is more than lenght of base pairs in genome. But they aren't mismatches.
Best regards, Evgeniy