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  1. User Support
  2. HELP-67

User Support: IGB metadata file format?

    Details

    • Type: Support
    • Status: Closed (View Workflow)
    • Priority: Major
    • Resolution: Done
    • Labels:
      None

      Description

      From: Nicholas Provart <nicholas.provart@utoronto.ca>
      Date: Thursday, 10/2/14, 1:29 PM
      To: Dr. Ann Loraine <Ann.Loraine@uncc.edu>
      Subject: IGB metadata file format?

      Hi Ann,

      Hope things are well. Work is proceeding by the AIP and by us to do read
      mapping of the existing SRA RNA-seq data sets. Vaishaili Deswal, cc'd, is
      going to be building the fast RNA-seq viewer as we had talked about with
      Chris Town.

      The idea had been to use an IGB-compatible metadata file to store the
      metadata for this viewer, such that it could be used by both IGB and our
      viewer.

      Could you provide the format of this to Vaishali?

      Thanks!

      Nick
      .........................................
      Nicholas Provart, PhD
      Associate Professor, Plant Cyberinfrastructure & Systems Biology
      President, North American Arabidopsis Steering Committee
      Chair, Multinational Arabidopsis Steering Committee
      Member, CAGEF and IAIC

      Department of Cell & Systems Biology, University of Toronto
      25 Willcocks St., Rm. 3072, Toronto, ON. M5S 3B2. CANADA
      Phone. +1-416-978-7141, Skype. nicholas.provart, Fax. +1-425-675-7036
      URL. http://csb.utoronto.ca/faculty/nicholas-provart
      The Bio-Analytic Resource. http://www.BAR.utoronto.ca

      email. nicholas.provart@utoronto.ca

        Attachments

        1. annots.xml
          2 kB
          Mason Meyer
        2. AIP.png
          106 kB
          Mason Meyer

          Issue Links

            Activity

            mason Mason Meyer (Inactive) created issue -
            dcnorris David Norris (Inactive) made changes -
            Field Original Value New Value
            Comment [ test ]
            mason Mason Meyer (Inactive) made changes -
            Comment [ test ]
            dcnorris David Norris (Inactive) made changes -
            Comment [ test ]
            dcnorris David Norris (Inactive) made changes -
            Comment [ From: Vaishali Deswal <v.deswal@mail.utoronto.ca>
            Date: Mon, Oct 6, 2014 at 10:28 AM
            To: Mason Meyer <Mason.Meyer@my.lr.edu>

            Subject: IGB metadata file format?
            Hi Mason

            Thank you for the links. I will keep in touch.
            best,

            Vaishali ]
            mason Mason Meyer (Inactive) made changes -
            Project IGB 8.2 [ 10840 ] User Support [ 10740 ]
            Key IGBF-214 HELP-67
            Workflow Loraine Lab Workflow [ 15126 ] classic default workflow [ 15423 ]
            mason Mason Meyer (Inactive) made changes -
            Attachment annots.xml [ 13041 ]
            mason Mason Meyer (Inactive) made changes -
            Link This issue relates to IGBF-687 [ IGBF-687 ]
            mason Mason Meyer (Inactive) made changes -
            Attachment AIP.png [ 13087 ]
            jeckstein John Eckstein (Inactive) made changes -
            Workflow classic default workflow [ 15423 ] Loraine Lab Workflow [ 16396 ]
            jeckstein John Eckstein (Inactive) made changes -
            Resolution Done [ 10000 ]
            Status Open [ 1 ] Closed [ 6 ]
            ann.loraine Ann Loraine made changes -
            Workflow Loraine Lab Workflow [ 16396 ] Fall 2019 Workflow Update [ 20536 ]
            ann.loraine Ann Loraine made changes -
            Workflow Fall 2019 Workflow Update [ 20536 ] Revised Fall 2019 Workflow Update [ 22739 ]

              People

              • Assignee:
                dcnorris David Norris (Inactive)
                Reporter:
                mason Mason Meyer (Inactive)
              • Votes:
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                Watchers:
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                Dates

                • Created:
                  Updated:
                  Resolved: