Details
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Type:
Support
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Status: Closed (View Workflow)
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Priority:
Major
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Resolution: Done
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Labels:None
Description
From: Nicholas Provart <nicholas.provart@utoronto.ca>
Date: Thursday, 10/2/14, 1:29 PM
To: Dr. Ann Loraine <Ann.Loraine@uncc.edu>
Subject: IGB metadata file format?
Hi Ann,
Hope things are well. Work is proceeding by the AIP and by us to do read
mapping of the existing SRA RNA-seq data sets. Vaishaili Deswal, cc'd, is
going to be building the fast RNA-seq viewer as we had talked about with
Chris Town.
The idea had been to use an IGB-compatible metadata file to store the
metadata for this viewer, such that it could be used by both IGB and our
viewer.
Could you provide the format of this to Vaishali?
Thanks!
Nick
.........................................
Nicholas Provart, PhD
Associate Professor, Plant Cyberinfrastructure & Systems Biology
President, North American Arabidopsis Steering Committee
Chair, Multinational Arabidopsis Steering Committee
Member, CAGEF and IAIC
Department of Cell & Systems Biology, University of Toronto
25 Willcocks St., Rm. 3072, Toronto, ON. M5S 3B2. CANADA
Phone. +1-416-978-7141, Skype. nicholas.provart, Fax. +1-425-675-7036
URL. http://csb.utoronto.ca/faculty/nicholas-provart
The Bio-Analytic Resource. http://www.BAR.utoronto.ca
email. nicholas.provart@utoronto.ca
Attachments
Issue Links
- relates to
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IGBF-687 Differences in the Annots.xml name field parsing
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- Closed
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Activity
| Field | Original Value | New Value |
|---|---|---|
| Comment | [ test ] |
| Comment | [ test ] |
| Comment | [ test ] |
| Comment |
[ From: Vaishali Deswal <v.deswal@mail.utoronto.ca>
Date: Mon, Oct 6, 2014 at 10:28 AM To: Mason Meyer <Mason.Meyer@my.lr.edu> Subject: IGB metadata file format? Hi Mason Thank you for the links. I will keep in touch. best, Vaishali ] |
| Attachment | annots.xml [ 13041 ] |
| Attachment | AIP.png [ 13087 ] |
| Workflow | classic default workflow [ 15423 ] | Loraine Lab Workflow [ 16396 ] |
| Resolution | Done [ 10000 ] | |
| Status | Open [ 1 ] | Closed [ 6 ] |
| Workflow | Loraine Lab Workflow [ 16396 ] | Fall 2019 Workflow Update [ 20536 ] |
| Workflow | Fall 2019 Workflow Update [ 20536 ] | Revised Fall 2019 Workflow Update [ 22739 ] |