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  1. IGB 7.0
  2. IGBC-323

wrong view mode

          Details

          • Type: Bug
          • Status: Closed (View Workflow)
          • Priority: Major
          • Resolution: Cannot Reproduce
          • Labels:
            None

            Description

            (from IGBC-315)

            Bug for the gff3, tabix indexed IGIS models.

            Start from a completely clean IGB. Do NOT select a species. Simply drag in the IGIS file.

            The screen shows a tbi indexed view, but 'view mode' is set to 'annotations'.

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                lfrohman Lance Frohman (Inactive) created issue -
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                lfrohman Lance Frohman (Inactive) added a comment -

                I could not find a good way to fix this,
                if you compare the path that the code goes
                thru for loading the file when no genome
                is selected vs. when a genome is selected,
                you can see the problem.

                Show
                lfrohman Lance Frohman (Inactive) added a comment - I could not find a good way to fix this, if you compare the path that the code goes thru for loading the file when no genome is selected vs. when a genome is selected, you can see the problem.
                lfrohman Lance Frohman (Inactive) made changes -
                Field Original Value New Value
                Assignee Lance Frohman [ lfrohman ] Hiral Vora [ hiralv ]
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                lfrohman Lance Frohman (Inactive) added a comment - - edited

                wait until I finish https://igbjira.uncc.edu/jira/browse/IGBC-358
                this may no longer be a problem then.

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                lfrohman Lance Frohman (Inactive) added a comment - - edited wait until I finish https://igbjira.uncc.edu/jira/browse/IGBC-358 this may no longer be a problem then.
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                hiralv Hiral Vora (Inactive) added a comment -

                Cannot reproduce. Can you?

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                hiralv Hiral Vora (Inactive) added a comment - Cannot reproduce. Can you?
                hiralv Hiral Vora (Inactive) made changes -
                Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
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                alyssa Alyssa Gulledge (Inactive) added a comment -

                Actually - it loads up as annot view... the index summary shows prior to loading data. But, if you load data and then zoom out, the index view is gone - even after you pass the autoload mark.

                I think what was throwing you off is that Annot view AND semantic view BOTH show the coverage summary prior to data being loaded... which is nice - even if it is unintentional. After any data has been loaded, the SemZoom and Annot. no longer show the index.

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                alyssa Alyssa Gulledge (Inactive) added a comment - Actually - it loads up as annot view... the index summary shows prior to loading data. But, if you load data and then zoom out, the index view is gone - even after you pass the autoload mark. I think what was throwing you off is that Annot view AND semantic view BOTH show the coverage summary prior to data being loaded... which is nice - even if it is unintentional. After any data has been loaded, the SemZoom and Annot. no longer show the index.
                alyssa Alyssa Gulledge (Inactive) made changes -
                Assignee Alyssa Gulledge [ alyssa ] Lance Frohman [ lfrohman ]
                lfrohman Lance Frohman (Inactive) made changes -
                Assignee Lance Frohman [ lfrohman ] Hiral Vora [ hiralv ]
                hiralv Hiral Vora (Inactive) made changes -
                Attachment Zoommode.jpg [ 11109 ]
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                hiralv Hiral Vora (Inactive) added a comment -

                I have not loaded anything yet is showing me correct view mode.

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                hiralv Hiral Vora (Inactive) added a comment - I have not loaded anything yet is showing me correct view mode.
                hiralv Hiral Vora (Inactive) made changes -
                Assignee Hiral Vora [ hiralv ] Alyssa Gulledge [ alyssa ]
                alyssa Alyssa Gulledge (Inactive) made changes -
                Status Open [ 1 ] Resolved [ 5 ]
                Assignee Alyssa Gulledge [ alyssa ]
                Resolution Cannot Reproduce [ 5 ]
                alyssa Alyssa Gulledge (Inactive) made changes -
                Status Resolved [ 5 ] Closed [ 6 ]

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    lfrohman Lance Frohman (Inactive)
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                    Dates

                    • Created:
                      Updated:
                      Resolved: