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  1. IGB 8.1
  2. IGBE-149

correct default styles not being set for GTF

          Details

          • Type: Bug
          • Status: Resolved (View Workflow)
          • Priority: Major
          • Resolution: Fixed
          • Labels:
            None

            Description

            To enable Galaxy users to view output from Cufflinks transcript assembly program, IGB should support visualization of cufflinks gtf.

            Currently, it does, but the style defaults are not being set correctly.

            The label field should be "ID" the strand should be "Arrow"

            See attached for an example file.

              Attachments

                Issue Links

                relates to

                Improvement - An improvement or enhancement to an existing feature or task. IGBE-150 add support for GTF to Galaxy

                • Major - Major loss of function.
                • Resolved

                  Activity

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                  ann.loraine Ann Loraine created issue -
                  ann.loraine Ann Loraine made changes -
                  Field Original Value New Value
                  Link This issue relates to IGBE-150 [ IGBE-150 ]
                  dcnorris David Norris (Inactive) made changes -
                  Assignee David Norris [ dcnorris ] Tarun Santosh [ tkanapar ]
                  tkanapar Tarun Santosh (Inactive) made changes -
                  Assignee Tarun Santosh [ tkanapar ] David Norris [ dcnorris ]
                  dcnorris David Norris (Inactive) made changes -
                  Assignee David Norris [ dcnorris ] Ann Loraine [ aloraine ]
                  ann.loraine Ann Loraine made changes -
                  Assignee Ann Loraine [ aloraine ] David Norris [ dcnorris ]
                  ann.loraine Ann Loraine made changes -
                  Assignee David Norris [ dcnorris ] Ann Loraine [ aloraine ]
                  ann.loraine Ann Loraine made changes -
                  Comment [ If the file name ends with "gtf.gz" the correct defaults are not being set.

                  Defaults need to be assigned to anything that ends with "ext.gz" where "ext" is any of the support types. ]
                  ann.loraine Ann Loraine made changes -
                  Status Open [ 1 ] Resolved [ 5 ]
                  Resolution Fixed [ 1 ]

                    People

                    • Assignee:
                      ann.loraine Ann Loraine
                      Reporter:
                      ann.loraine Ann Loraine
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                      Dates

                      • Created:
                        Updated:
                        Resolved: