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  1. IGB
  2. IGBF-1077

Adding Synonym File removes Data Sources Tab

        Details

          Description

          While testing to load a custom genome I found a bug in the Data Sources Tab in the Preferences Menu when loading a synonym file.

          To re-create the bug:
          2. the synonym file, chromosome.txt, was loaded into IGB: Configure > Data Sources Tab > Chromosome Synonym File
          3. immediately close Preferences Menu
          3. restart igb
          4. Check for the Data Sources Tab under the Preferences Menu.

          Tested on IGB 8.5.2 on Linux and Mac

          In order to get the tab back we had to re-set the preferences to default under the Other Options Tab in the Preferences Menu.

          Attached is the synonym file that was used.

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              dfreese Daniella Freese (Inactive) created issue -
              dfreese Daniella Freese (Inactive) made changes -
              Field Original Value New Value
              Epic Link IGBF-439 [ 15497 ]
              dfreese Daniella Freese (Inactive) made changes -
              Rank Ranked higher
              dcnorris David Norris (Inactive) made changes -
              Status Open [ 1 ] Needs Testing [ 10002 ]
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              dcnorris David Norris (Inactive) added a comment -

              This bug is now resolved on the master branch. Please test to confirm you can no longer produce the issue.

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              dcnorris David Norris (Inactive) added a comment - This bug is now resolved on the master branch. Please test to confirm you can no longer produce the issue.
              dcnorris David Norris (Inactive) made changes -
              Assignee Daniella Freese [ dfreese ]
              dcnorris David Norris (Inactive) made changes -
              Sprint Sprint 31 [ 39 ]
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              dcnorris David Norris (Inactive) added a comment -

              Test Download Binaries available from: http://eos.transvar.org/igb/

              Show
              dcnorris David Norris (Inactive) added a comment - Test Download Binaries available from: http://eos.transvar.org/igb/
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              dfreese Daniella Freese (Inactive) added a comment -

              Tested on the development version IGB 9.0.0 on Linux. The bug looks fixed. I tested to check if the custom genome data could be viewed correctly and the Data Sources Tab was available to the users after restarting IGB.

              1. loaded the chromosome.txt file in Configure > Data Sources Tab > Chromosome Synonym File
              2. restart igb
              3. load the custom sequence.fasta and sequence.gb files

              The files loaded into igb and could be viewed correctly. The Data Sources Tab was available to the user.

              method 2-

              Show
              dfreese Daniella Freese (Inactive) added a comment - Tested on the development version IGB 9.0.0 on Linux. The bug looks fixed. I tested to check if the custom genome data could be viewed correctly and the Data Sources Tab was available to the users after restarting IGB. 1. loaded the chromosome.txt file in Configure > Data Sources Tab > Chromosome Synonym File 2. restart igb 3. load the custom sequence.fasta and sequence.gb files The files loaded into igb and could be viewed correctly. The Data Sources Tab was available to the user. method 2-
              dfreese Daniella Freese (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Needs Testing [ 10002 ] Closed [ 6 ]
              dcnorris David Norris (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Closed [ 6 ] Open [ 1 ]
              dcnorris David Norris (Inactive) made changes -
              Fix Version/s 8.5.3 Minor Release [ 10202 ]
              dcnorris David Norris (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Open [ 1 ] Closed [ 6 ]
              mason Mason Meyer (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Closed [ 6 ] Open [ 1 ]
              mason Mason Meyer (Inactive) made changes -
              Labels Synonyms
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              mason Mason Meyer (Inactive) added a comment -

              This issue has been retested for the 8.5.3 release and it is good to go.

              Show
              mason Mason Meyer (Inactive) added a comment - This issue has been retested for the 8.5.3 release and it is good to go.
              mason Mason Meyer (Inactive) made changes -
              Resolution Done [ 10000 ]
              Status Open [ 1 ] Closed [ 6 ]
              ann.loraine Ann Loraine made changes -
              Workflow Loraine Lab Workflow [ 16954 ] Fall 2019 Workflow Update [ 19752 ]
              ann.loraine Ann Loraine made changes -
              Workflow Fall 2019 Workflow Update [ 19752 ] Revised Fall 2019 Workflow Update [ 21871 ]

                People

                • Assignee:
                  dfreese Daniella Freese (Inactive)
                  Reporter:
                  dfreese Daniella Freese (Inactive)
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                  Watchers:
                  3 Start watching this issue

                  Dates

                  • Created:
                    Updated:
                    Resolved: