[IGBF-1090] Implement saving of all chromosomes when exporting as bedgraph - JIRA UNCC

Details

Type: Improvement
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: 9.0.1 Minor Release
Labels:
None

Story Points:
3
Sprint:
Fall 2017

Description

A user requested that we add the ability to export data of all chromosomes in IGB when exporting a graph track (as a bedgraph file).

We currently export data of all loaded chromosomes for annotations, but not graphs.

Attachments

Options
- Sort By Name
- Sort By Date
- Ascending
- Descending
- Thumbnails
- List
- Download All

Attachments

SavedDataFromTwoSeparateTracks.png
52 kB
03/May/17 1:02 PM
WhatsReallySaved.png
37 kB
03/May/17 1:33 PM

Issue Links

relates to

IGBF-1147 better bedgraph formatting

In Progress

IGBF-1128 Save As... feature appends extra text that can cause the file name to be invalid

Closed

IGBF-1149 default file extension for graph tracks

Closed

IGBF-144 Save all data and not just current chromosome for graphs

Closed

Activity

Ascending order - Click to sort in descending order

Mason Meyer (Inactive) created issue - 09/Feb/16 10:20 AM

Mason Meyer (Inactive) made changes - 09/Feb/16 10:20 AM

Field	Original Value	New Value
Summary	Implementing saving of all chromosomes when exporting as bedgraph	Implement saving of all chromosomes when exporting as bedgraph

Mason Meyer (Inactive) made changes - 09/Feb/16 12:26 PM

Rank

Ranked higher

Mason Meyer (Inactive) made changes - 09/Feb/16 12:27 PM

Rank

Ranked higher

Mason Meyer (Inactive) made changes - 24/May/16 6:53 AM

Rank

Ranked lower

Ann Loraine made changes - 14/Feb/17 12:14 PM

Rank

Ranked higher

Ann Loraine made changes - 08/Mar/17 2:21 PM

Rank

Ranked higher

Ann Loraine made changes - 08/Mar/17 2:21 PM

Rank

Ranked higher

Ann Loraine made changes - 08/Mar/17 2:22 PM

Story Points

Ann Loraine made changes - 08/Mar/17 4:17 PM

Story Points	2	3
Sprint		Sprint 39 [ 47 ]
Assignee		Jennifer Daly [ jdaly ]

Sneha Ramesh Watharkar (Inactive) made changes - 10/Mar/17 10:02 AM

Status

Open [ 1 ]

In Progress [ 3 ]

Sneha Ramesh Watharkar (Inactive) made changes - 19/Apr/17 10:36 AM

Status

In Progress [ 3 ]

Needs Testing [ 10002 ]

Mason Meyer (Inactive) made changes - 21/Apr/17 2:10 PM

Flagged

Impediment [ 10000 ]

Mason Meyer (Inactive) made changes - 21/Apr/17 2:10 PM

Flagged

Impediment [ 10000 ]

Mason Meyer (Inactive) made changes - 21/Apr/17 2:10 PM

Flagged

Impediment [ 10000 ]

Mason Meyer (Inactive) made changes - 21/Apr/17 2:11 PM

Flagged

Impediment [ 10000 ]

Mason Meyer (Inactive) made changes - 21/Apr/17 2:42 PM

Status

Needs Testing [ 10002 ]

Testing In Progress [ 10003 ]

Ann Loraine made changes - 23/Apr/17 11:17 AM

Status

Testing In Progress [ 10003 ]

Pull Request Submitted [ 10101 ]

Ann Loraine made changes - 27/Apr/17 6:25 PM

Status

Pull Request Submitted [ 10101 ]

Needs Testing [ 10002 ]

Ann Loraine made changes - 27/Apr/17 6:26 PM

Assignee

Jennifer Daly [ jdaly ]

Mason Meyer [ mason ]

Mason Meyer (Inactive) made changes - 30/Apr/17 5:51 PM

Status

Needs Testing [ 10002 ]

Testing In Progress [ 10003 ]

Mason Meyer (Inactive) made changes - 30/Apr/17 5:51 PM

Status

Testing In Progress [ 10003 ]

Needs Testing [ 10002 ]

Mason Meyer (Inactive) made changes - 30/Apr/17 10:21 PM

Status

Needs Testing [ 10002 ]

Testing In Progress [ 10003 ]

Mason Meyer (Inactive) made changes - 30/Apr/17 10:21 PM

Assignee

Mason Meyer [ mason ]

Jennifer Daly [ jdaly ]

Mason Meyer (Inactive) made changes - 30/Apr/17 10:21 PM

Status

Testing In Progress [ 10003 ]

Open [ 1 ]

Mason Meyer (Inactive) made changes - 30/Apr/17 10:22 PM

Rank

Ranked higher

Ann Loraine made changes - 02/May/17 7:28 AM

Assignee

Jennifer Daly [ jdaly ]

Ivory Clabaugh [ ieclabau ]

Ivory Blakley (Inactive) made changes - 02/May/17 12:29 PM

Status

Open [ 1 ]

In Progress [ 3 ]

Ann Loraine made changes - 03/May/17 11:31 AM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Ann Loraine made changes - 03/May/17 11:37 AM

Status

Needs 1st Level Review [ 10005 ]

Reviewing [ 10301 ]

Ivory Blakley (Inactive) made changes - 03/May/17 1:02 PM

Attachment

SavedDataFromTwoSeparateTracks.png [ 13974 ]

Ivory Blakley (Inactive) made changes - 03/May/17 1:33 PM

Attachment

WhatsReallySaved.png [ 13975 ]

Ivory Blakley (Inactive) made changes - 04/May/17 1:56 PM

Link

This issue relates to IGBF-1147 [ IGBF-1147 ]

Ivory Blakley (Inactive) made changes - 04/May/17 2:02 PM

Link

This issue relates to ~~IGBF-1128~~ [ ~~IGBF-1128~~ ]

Ivory Blakley (Inactive) made changes - 04/May/17 3:09 PM

Link

This issue relates to IGBF-1148 [ IGBF-1148 ]

Ivory Blakley (Inactive) made changes - 04/May/17 3:14 PM

Link

This issue relates to ~~IGBF-1149~~ [ ~~IGBF-1149~~ ]

Ivory Blakley (Inactive) made changes - 05/May/17 2:37 PM

Status

Reviewing [ 10301 ]

Open [ 1 ]

Ivory Blakley (Inactive) made changes - 02/Jun/17 1:13 PM

Assignee

Ivory Clabaugh [ ieclabau ]

Jennifer Daly [ jdaly ]

Ivory Blakley (Inactive) made changes - 02/Jun/17 1:13 PM

Status

Open [ 1 ]

In Progress [ 3 ]

Ivory Blakley (Inactive) made changes - 06/Jun/17 10:22 AM

Comment

[ change we were working on ...
                aseq.getGenomeVersion().getSeqList().forEach(seq -> {
                    //myList.get(0).addAll(seq.getAnnotations(Pattern.compile(".*")).stream().filter(s -> s instanceof GraphSym).collect(Collectors.toList()));
                    myList.get(0).addAll(seq.getAnnotations(Pattern.compile(".*")).stream().filter(s -> s == atier.getInfo()).collect(Collectors.toList()));
                }); ]

Ivory Blakley (Inactive) made changes - 06/Jun/17 10:23 AM

Assignee

Jennifer Daly [ jdaly ]

Ivory Clabaugh [ ieclabau ]

Ivory Blakley (Inactive) made changes - 06/Jun/17 5:31 PM

Status

In Progress [ 3 ]

Needs 1st Level Review [ 10005 ]

Ivory Blakley (Inactive) made changes - 06/Jun/17 5:32 PM

Assignee

Ivory Clabaugh [ ieclabau ]

Ivory Blakley (Inactive) made changes - 16/Jun/17 3:56 PM

Link

This issue relates to ~~IGBF-144~~ [ ~~IGBF-144~~ ]

Mason Meyer (Inactive) made changes - 29/Jun/17 1:56 PM

Status

Needs 1st Level Review [ 10005 ]

Ready for Pull Request [ 10304 ]

Mason Meyer (Inactive) made changes - 29/Jun/17 1:56 PM

Assignee

Ivory Clabaugh [ ieclabau ]

Ann Loraine made changes - 21/Aug/17 10:14 AM

Status

Ready for Pull Request [ 10304 ]

Needs Testing [ 10002 ]

Ann Loraine made changes - 21/Aug/17 2:19 PM

Assignee

Ivory Clabaugh [ ieclabau ]

Mason Meyer [ mason ]

Mason Meyer (Inactive) made changes - 31/Aug/17 3:46 PM

Status

Needs Testing [ 10002 ]

Testing In Progress [ 10003 ]

Mason Meyer (Inactive) made changes - 04/Sep/17 11:38 AM

Assignee

Mason Meyer [ mason ]

Ivory Clabaugh [ ieclabau ]

Mason Meyer (Inactive) made changes - 04/Sep/17 11:38 AM

Status

Testing In Progress [ 10003 ]

Reviewing Pull Request [ 10303 ]

Mason Meyer (Inactive) made changes - 04/Sep/17 1:25 PM

Status

Reviewing Pull Request [ 10303 ]

Open [ 1 ]

Ivory Blakley (Inactive) made changes - 08/Sep/17 3:51 PM

Status

Open [ 1 ]

Pull Request Submitted [ 10101 ]

Ivory Blakley (Inactive) made changes - 08/Sep/17 3:52 PM

Assignee

Ivory Clabaugh [ ieclabau ]

Ann Loraine [ aloraine ]

Ann Loraine made changes - 11/Sep/17 11:58 AM

Status

Pull Request Submitted [ 10101 ]

Reviewing Pull Request [ 10303 ]

Ann Loraine made changes - 11/Sep/17 12:01 PM

Status

Reviewing Pull Request [ 10303 ]

Needs Testing [ 10002 ]

Ann Loraine made changes - 11/Sep/17 12:01 PM

Assignee

Ann Loraine [ aloraine ]

Mason Meyer [ mason ]

Mason Meyer (Inactive) made changes - 15/Sep/17 12:22 PM

Status

Needs Testing [ 10002 ]

Testing In Progress [ 10003 ]

Mason Meyer (Inactive) made changes - 18/Sep/17 4:22 PM

Resolution		Done [ 10000 ]
Status	Testing In Progress [ 10003 ]	Closed [ 6 ]

Mason Meyer (Inactive) made changes - 19/Sep/17 9:42 AM

Fix Version/s

9.0.1 Minor Release [ 10500 ]

Ann Loraine made changes - 27/Aug/19 4:59 PM

Workflow

Loraine Lab Workflow [ 16971 ]

Fall 2019 Workflow Update [ 19760 ]

Ann Loraine made changes - 16/Oct/19 5:49 PM

Workflow

Fall 2019 Workflow Update [ 19760 ]

Revised Fall 2019 Workflow Update [ 21879 ]

People

Assignee:

Mason Meyer (Inactive)

Reporter:

Mason Meyer (Inactive)

Votes:

0 Vote for this issue

Watchers:

4 Start watching this issue

Dates

Created:

09/Feb/16 10:20 AM

Updated:

19/Sep/17 9:42 AM

Resolved:

18/Sep/17 4:22 PM