[IGBF-1108] App Manager does not properly handle installation error when not connected to the internet - JIRA UNCC

Details

Type: Bug
Status: Closed (View Workflow)
Priority: Major
Resolution: Done
Affects Version/s: None
Fix Version/s: 9.0.2 Minor Release
Labels:
- Intermediate

Story Points:
0.5
Sprint:
B - Summer 2018, Summer 2018 Part 2, Summer 2018 Part 3, Fall 2018 1, Fall 2018 Sprint 2

Description

To Reproduce:
-Open App manager
-Disconnect from the internet
-Try to install app

App installs successfully even though an exception is thrown

Attachments

Issue Links

is blocked by

IGBF-1366 Fix App Manager failure to load bundles when running in Development mode

Closed

relates to

IGBF-1308 Fix contig name error in ProtAnnot window title

Closed

Activity

Ascending order - Click to sort in descending order

Hide

Permalink

Mason Meyer (Inactive) added a comment - 24/May/16 8:13 AM

ERROR: Resolver: Install error - com.lorainelab.protannot
java.io.IOException: Error accessing http://bioviz.org/igbserver/optional/protannot-8.5.4.jar
at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:217)
at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:199)
at org.apache.felix.bundlerepository.impl.ResolverImpl.deploy(ResolverImpl.java:629)
at com.lorainelab.igb.plugins.BundleActionManager.installBundle(BundleActionManager.java:122)
at com.lorainelab.igb.plugins.BundleActionManager.access$000(BundleActionManager.java:37)
at com.lorainelab.igb.plugins.BundleActionManager$1.get(BundleActionManager.java:101)
at com.lorainelab.igb.plugins.BundleActionManager$1.get(BundleActionManager.java:96)
at java.util.concurrent.CompletableFuture$AsyncSupply.run(Unknown Source)
at java.util.concurrent.CompletableFuture$AsyncSupply.exec(Unknown Source)
at java.util.concurrent.ForkJoinTask.doExec(Unknown Source)
at java.util.concurrent.ForkJoinPool$WorkQueue.runTask(Unknown Source)
at java.util.concurrent.ForkJoinPool.runWorker(Unknown Source)
at java.util.concurrent.ForkJoinWorkerThread.run(Unknown Source)
Caused by: java.net.UnknownHostException: bioviz.org
at java.net.AbstractPlainSocketImpl.connect(Unknown Source)
at java.net.PlainSocketImpl.connect(Unknown Source)
at java.net.SocksSocketImpl.connect(Unknown Source)
at java.net.Socket.connect(Unknown Source)
at java.net.Socket.connect(Unknown Source)
at sun.net.NetworkClient.doConnect(Unknown Source)
at sun.net.www.http.HttpClient.openServer(Unknown Source)
at sun.net.www.http.HttpClient.openServer(Unknown Source)
at sun.net.www.http.HttpClient.<init>(Unknown Source)
at sun.net.www.http.HttpClient.New(Unknown Source)
at sun.net.www.http.HttpClient.New(Unknown Source)
at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(Unknown Source)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(Unknown Source)
at sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unknown Source)
at sun.net.www.protocol.http.HttpURLConnection.connect(Unknown Source)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(Unknown Source)
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown Source)
at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:209)
... 12 more
12:12:08.763 INFO com.affymetrix.igb.IGB - bundle com.lorainelab.protannot;8.5.4 installed

Show

Mason Meyer (Inactive) added a comment - 24/May/16 8:13 AM ERROR: Resolver: Install error - com.lorainelab.protannot java.io.IOException: Error accessing http://bioviz.org/igbserver/optional/protannot-8.5.4.jar at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:217) at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:199) at org.apache.felix.bundlerepository.impl.ResolverImpl.deploy(ResolverImpl.java:629) at com.lorainelab.igb.plugins.BundleActionManager.installBundle(BundleActionManager.java:122) at com.lorainelab.igb.plugins.BundleActionManager.access$000(BundleActionManager.java:37) at com.lorainelab.igb.plugins.BundleActionManager$1.get(BundleActionManager.java:101) at com.lorainelab.igb.plugins.BundleActionManager$1.get(BundleActionManager.java:96) at java.util.concurrent.CompletableFuture$AsyncSupply.run(Unknown Source) at java.util.concurrent.CompletableFuture$AsyncSupply.exec(Unknown Source) at java.util.concurrent.ForkJoinTask.doExec(Unknown Source) at java.util.concurrent.ForkJoinPool$WorkQueue.runTask(Unknown Source) at java.util.concurrent.ForkJoinPool.runWorker(Unknown Source) at java.util.concurrent.ForkJoinWorkerThread.run(Unknown Source) Caused by: java.net.UnknownHostException: bioviz.org at java.net.AbstractPlainSocketImpl.connect(Unknown Source) at java.net.PlainSocketImpl.connect(Unknown Source) at java.net.SocksSocketImpl.connect(Unknown Source) at java.net.Socket.connect(Unknown Source) at java.net.Socket.connect(Unknown Source) at sun.net.NetworkClient.doConnect(Unknown Source) at sun.net.www.http.HttpClient.openServer(Unknown Source) at sun.net.www.http.HttpClient.openServer(Unknown Source) at sun.net.www.http.HttpClient.<init>(Unknown Source) at sun.net.www.http.HttpClient.New(Unknown Source) at sun.net.www.http.HttpClient.New(Unknown Source) at sun.net.www.protocol.http.HttpURLConnection.getNewHttpClient(Unknown Source) at sun.net.www.protocol.http.HttpURLConnection.plainConnect0(Unknown Source) at sun.net.www.protocol.http.HttpURLConnection.plainConnect(Unknown Source) at sun.net.www.protocol.http.HttpURLConnection.connect(Unknown Source) at sun.net.www.protocol.http.HttpURLConnection.getInputStream0(Unknown Source) at sun.net.www.protocol.http.HttpURLConnection.getInputStream(Unknown Source) at org.apache.felix.bundlerepository.impl.FileUtil.openURL(FileUtil.java:209) ... 12 more 12:12:08.763 INFO com.affymetrix.igb.IGB - bundle com.lorainelab.protannot;8.5.4 installed

14 older comments

Hide

Permalink

Sneha Ramesh Watharkar (Inactive) added a comment - 15/Aug/18 3:06 PM

Changes reviewed and it looks good!.

Assigning back to Kiran Korey.

Show

Sneha Ramesh Watharkar (Inactive) added a comment - 15/Aug/18 3:06 PM Changes reviewed and it looks good!. Assigning back to Kiran Korey .

Hide

Permalink

Ann Loraine added a comment - 21/Aug/18 1:27 PM

Pull request merged into master.

Show

Ann Loraine added a comment - 21/Aug/18 1:27 PM Pull request merged into master.

Hide

Permalink

Srishti Tiwari (Inactive) added a comment - 04/Sep/18 5:40 PM - edited

Tested on 9.0.2 Environment. The apps do not install and no error is thrown.

Moving it to done column.

Show

Srishti Tiwari (Inactive) added a comment - 04/Sep/18 5:40 PM - edited Tested on 9.0.2 Environment. The apps do not install and no error is thrown. Moving it to done column.

Hide

Permalink

Srishti Tiwari (Inactive) added a comment - 06/Sep/18 10:56 AM

Just to add an observation, when we were testing it on MAC OS, there was no repository selected by default when we opened app manager. In case of windows and Linux, the repository "http://bioviz.org/igbserver" was selected by default. Is it an expected behaviour?

Show

Srishti Tiwari (Inactive) added a comment - 06/Sep/18 10:56 AM Just to add an observation, when we were testing it on MAC OS, there was no repository selected by default when we opened app manager. In case of windows and Linux, the repository "http://bioviz.org/igbserver" was selected by default. Is it an expected behaviour?

Hide

Permalink

Ann Loraine added a comment - 06/Sep/18 11:06 AM

Please repeat test on Mac after resetting all preferences to defaults. It is possible that the repository was de-activated on a prior run of IGB on the same machine.

Show

Ann Loraine added a comment - 06/Sep/18 11:06 AM Please repeat test on Mac after resetting all preferences to defaults. It is possible that the repository was de-activated on a prior run of IGB on the same machine.

People

Assignee:

Srishti Tiwari (Inactive)

Reporter:

John Eckstein (Inactive)

Votes:

0 Vote for this issue

Watchers:

7 Start watching this issue

Dates

Created:

08/Apr/16 7:03 AM

Updated:

06/Sep/18 11:06 AM

Resolved:

04/Sep/18 5:43 PM