Uploaded image for project: 'IGB'
  1. IGB
  2. IGBF-1174

IGB app shortcut link does not work on Linux(Ubuntu)

        Details

        • Type: Bug
        • Status: To-Do (View Workflow)
        • Priority: Major
        • Resolution: Unresolved
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None
        • Story Points:
          2
        • Epic Link:
        • Sprint:
          Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25

          Description

          When IGB is installed in Linux(Ubuntu). The shortcut link which was created during setup process does not work. When tried to run/open IGB using the Shortcut link, it throws an error "java.util.NoSuchElementException"

          Error screenshot is attached.
          Workaround for this issue is to manually go to the location "/opt/IGB" of shell 'IntegratedGenomeBrowser' and then execute it as script. This will launch IGB successfully.

          System Details:
          OS: Linux (Ubunut 17.04)
          JRE: 1.8

          UPDATE: The desktop icon appears to be working correctly for the IGB 9.1.8 installation on Ubuntu 16.04, and only requires that the desktop icon be enabled on Ubuntu 20.04. We have not been able to replicate the original error attached to this ticket. As such, the task for this ticket should be to investigate if the IGB desktop icon can be made to be enabled by default on Ubuntu.

            Attachments

              Issue Links

              relates to

              Documentation - When documentation is missing or wrong IGBF-3090 Add Linux installation page to User's Guide

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                spatil26 Sanket Patil (Inactive) created issue -
                spatil26 Sanket Patil (Inactive) made changes -
                Field Original Value New Value
                Description When IGB is installed in Linux(Ubuntu). The shortcut link which was created during setup process does not work. When tried to run/open IGB using the Shortcut link, it throws an error "java.util.NoSuchElementException"

                Error screenshot is attached blob:https://jira.transvar.org/743ff655-24e3-4f52-929e-e635367297ce

                Workaround for this issue is to manually go to the location "/opt/IGB" of shell 'IntegratedGenomeBrowser' and then execute it as script.

                System Details:
                OS: Linux (Ubunut 17.04)
                JRE: 1.8                 		When IGB is installed in Linux(Ubuntu). The shortcut link which was created during setup process does not work. When tried to run/open IGB using the Shortcut link, it throws an error "java.util.NoSuchElementException"

                Error screenshot is attached.
                Workaround for this issue is to manually go to the location "/opt/IGB" of shell 'IntegratedGenomeBrowser' and then execute it as script.

                System Details:
                OS: Linux (Ubunut 17.04)
                JRE: 1.8
                spatil26 Sanket Patil (Inactive) made changes -
                Assignee Ann Loraine [ aloraine ]
                spatil26 Sanket Patil (Inactive) made changes -
                Description When IGB is installed in Linux(Ubuntu). The shortcut link which was created during setup process does not work. When tried to run/open IGB using the Shortcut link, it throws an error "java.util.NoSuchElementException"

                Error screenshot is attached.
                Workaround for this issue is to manually go to the location "/opt/IGB" of shell 'IntegratedGenomeBrowser' and then execute it as script.

                System Details:
                OS: Linux (Ubunut 17.04)
                JRE: 1.8                 		When IGB is installed in Linux(Ubuntu). The shortcut link which was created during setup process does not work. When tried to run/open IGB using the Shortcut link, it throws an error "java.util.NoSuchElementException"

                Error screenshot is attached.
                Workaround for this issue is to manually go to the location "/opt/IGB" of shell 'IntegratedGenomeBrowser' and then execute it as script. This will launch IGB successfully.

                System Details:
                OS: Linux (Ubunut 17.04)
                JRE: 1.8
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 17835 ] Fall 2019 Workflow Update [ 18825 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 18825 ] Revised Fall 2019 Workflow Update [ 20950 ]
                Status Open [ 1 ] To-Do [ 10305 ]
                nfreese Nowlan Freese made changes -
                Sprint Spring 2 2021 Apr 5 - Apr 16 [ 118 ]
                ann.loraine Ann Loraine made changes -
                Epic Link IGBF-1765 [ 17855 ]
                ann.loraine Ann Loraine made changes -
                Sprint Spring 2 2021 Apr 5 - Apr 16 [ 118 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30 [ 118, 119 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30 [ 118, 119 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14 [ 118, 119, 120 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14 [ 118, 119, 120 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28 [ 118, 119, 120, 121 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28 [ 118, 119, 120, 121 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11 [ 118, 119, 120, 121, 122 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11 [ 118, 119, 120, 121, 122 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 118, 119, 120, 121, 122, 123 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 118, 119, 120, 121, 122, 123 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9 [ 118, 119, 120, 121, 122, 123, 124 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Sprint Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25, Summer 2 2021 Jun 28 - Jul 9 [ 118, 119, 120, 121, 122, 123, 124 ] Spring 2 2021 Apr 5 - Apr 16, Spring 3 2021 Apr 19 - Apr 30, Spring 4 2021 May 3 - May 14, Spring 5 2021 May 17 - May 28, Spring 6 2021 May 31 - June 11, Summer 1 2021 Jun 14 - Jun 25 [ 118, 119, 120, 121, 122, 123 ]
                nfreese Nowlan Freese made changes -
                Link This issue relates to IGBF-3090 [ IGBF-3090 ]
                nfreese Nowlan Freese made changes -
                Description When IGB is installed in Linux(Ubuntu). The shortcut link which was created during setup process does not work. When tried to run/open IGB using the Shortcut link, it throws an error "java.util.NoSuchElementException"

                Error screenshot is attached.
                Workaround for this issue is to manually go to the location "/opt/IGB" of shell 'IntegratedGenomeBrowser' and then execute it as script. This will launch IGB successfully.

                System Details:
                OS: Linux (Ubunut 17.04)
                JRE: 1.8                 		When IGB is installed in Linux(Ubuntu). The shortcut link which was created during setup process does not work. When tried to run/open IGB using the Shortcut link, it throws an error "java.util.NoSuchElementException"

                Error screenshot is attached.
                Workaround for this issue is to manually go to the location "/opt/IGB" of shell 'IntegratedGenomeBrowser' and then execute it as script. This will launch IGB successfully.

                System Details:
                OS: Linux (Ubunut 17.04)
                JRE: 1.8

                UPDATE:
                nfreese Nowlan Freese made changes -
                Description When IGB is installed in Linux(Ubuntu). The shortcut link which was created during setup process does not work. When tried to run/open IGB using the Shortcut link, it throws an error "java.util.NoSuchElementException"

                Error screenshot is attached.
                Workaround for this issue is to manually go to the location "/opt/IGB" of shell 'IntegratedGenomeBrowser' and then execute it as script. This will launch IGB successfully.

                System Details:
                OS: Linux (Ubunut 17.04)
                JRE: 1.8

                UPDATE:                 		When IGB is installed in Linux(Ubuntu). The shortcut link which was created during setup process does not work. When tried to run/open IGB using the Shortcut link, it throws an error "java.util.NoSuchElementException"

                Error screenshot is attached.
                Workaround for this issue is to manually go to the location "/opt/IGB" of shell 'IntegratedGenomeBrowser' and then execute it as script. This will launch IGB successfully.

                System Details:
                OS: Linux (Ubunut 17.04)
                JRE: 1.8

                UPDATE: The desktop icon appears to be working correctly for the IGB 9.1.8 installation on Ubuntu 16.04, and only requires that the desktop icon be enabled on Ubuntu 20.04. We have not been able to replicate the original error attached to this ticket. As such, the task for this ticket should be to investigate if the IGB desktop icon can be made to be enabled by default on Ubuntu.

                  People

                  • Assignee:
                    Unassigned
                    Reporter:
                    spatil26 Sanket Patil (Inactive)
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    3 Start watching this issue

                    Dates

                    • Created:
                      Updated: