Details
-
Type: Bug
-
Status: Closed (View Workflow)
-
Priority: Major
-
Resolution: Done
-
Affects Version/s: None
-
Fix Version/s: 9.0.1 Minor Release
-
Labels:None
-
Story Points:4
-
Sprint:B - Summer 2018
Description
IGB 9.0.1 contains updates to Quickload sites added by default to each session.
However, if you start 9.0.1 after running 9.0.0, you will see what appear to be duplicate QL sites.
To repeat:
1) Start IGB 9.0.0
2) Select File > Preferences > Data Sources
3) Observe Quickload data sources loaded from IGB igb_preferences.json:
- IGB Quickload
- Pollen
- Cytokinin
- Blueberry
4) Quit
5) Start IGB 9.0.1
6) Select File > Preferences > Data Sources
7) Observe too many QL Data Sources
Attachments
Issue Links
- relates to
-
IGBF-1200 remove pollen and cyto QL sites and add http://lorainelab-quickload.scidas.org/rnaseq RNA-Seq QL site
- Closed
-
IGBF-1219 Load Priority should be updated from preferences
- Closed
-
IGBF-1195 Add soybean RNA-Seq quickload site to IGB
- Closed
-
IGBF-1403 Add DNA-Seq and ChIP-Seq Quickload sources
- Closed
Activity
Field | Original Value | New Value |
---|---|---|
Sprint | A - Spring 2018 [ 48 ] |
Rank | Ranked higher |
Rank | Ranked higher |
Summary | duplicate quickload data sources | Remove non-identical quickload data sources upon re-installation |
Description |
IGB 9.0.1 shows too many Quickload sites.
This is likely due to preferences not being updated to reflect changes in default QL sites. |
IGB 9.0.1 shows too many Quickload sites.
To repeat: 1) Start IGB 9.0.0 2) Visit Arabidopsis thaliana June 2009 genome 3) Observe Quickload data sources 4) Reset preferences to defaults (IGB will quit) 5) Start IGB 9.0.1 6) Select Arabidopsis thaliana June 2009 geome 7) Observe duplicate Quickload data sources This is likely due to preferences not being updated to reflect changes in default QL sites. Possible solutions: Investigate whether or not we can uniquely identify default QL sites. Can the name be used? Investigate preferences migration mechanisms for new IGB versions. |
Summary | Remove non-identical quickload data sources upon re-installation | New versions of IGB with new QL sites inherit the old ones, plus duplicates |
Description |
IGB 9.0.1 shows too many Quickload sites.
To repeat: 1) Start IGB 9.0.0 2) Visit Arabidopsis thaliana June 2009 genome 3) Observe Quickload data sources 4) Reset preferences to defaults (IGB will quit) 5) Start IGB 9.0.1 6) Select Arabidopsis thaliana June 2009 geome 7) Observe duplicate Quickload data sources This is likely due to preferences not being updated to reflect changes in default QL sites. Possible solutions: Investigate whether or not we can uniquely identify default QL sites. Can the name be used? Investigate preferences migration mechanisms for new IGB versions. |
IGB 9.0.1 contains updates to Quickload sites added by default to each session.
However, if you start 9.0.1 after running 9.0.0, you will see what appear to be duplicate QL sites. To repeat: 1) Start IGB 9.0.0 2) Visit Arabidopsis thaliana June 2009 genome 3) Observe Quickload data sources 4) Reset preferences to defaults (IGB will quit) 5) Start IGB 9.0.1 6) Select Arabidopsis thaliana June 2009 geome 7) Observe duplicate Quickload data sources This is likely due to IGB preferences not being updated to reflect changes in default QL sites. Possible solutions: Investigate whether or not we can uniquely identify default QL sites. Can the name be used? Investigate preferences migration mechanisms for new IGB versions. |
Summary | New versions of IGB with new QL sites inherit the old ones, plus duplicates | Duplicate QL sites appear in new versions of IGB with changed default QL sites |
Assignee | Ivory Clabaugh [ ieclabau ] |
Description |
IGB 9.0.1 contains updates to Quickload sites added by default to each session.
However, if you start 9.0.1 after running 9.0.0, you will see what appear to be duplicate QL sites. To repeat: 1) Start IGB 9.0.0 2) Visit Arabidopsis thaliana June 2009 genome 3) Observe Quickload data sources 4) Reset preferences to defaults (IGB will quit) 5) Start IGB 9.0.1 6) Select Arabidopsis thaliana June 2009 geome 7) Observe duplicate Quickload data sources This is likely due to IGB preferences not being updated to reflect changes in default QL sites. Possible solutions: Investigate whether or not we can uniquely identify default QL sites. Can the name be used? Investigate preferences migration mechanisms for new IGB versions. |
IGB 9.0.1 contains updates to Quickload sites added by default to each session.
However, if you start 9.0.1 after running 9.0.0, you will see what appear to be duplicate QL sites. To repeat: 1) Start IGB 9.0.0 2) Select File > Preferences > Data Sources 3) Observe Quickload data sources loaded from IGB igb_preferences.json: * IGB Quickload * Pollen * Cytokinin * Blueberry 4) Quit 5) Start IGB 9.0.1 6) Select File > Preferences > Data Sources 7) Observe too many QL Data Sources |
Status | Open [ 1 ] | In Progress [ 3 ] |
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Assignee | Ivory Clabaugh [ ieclabau ] | Deepti Joshi [ djoshi4 ] |
Status | Needs 1st Level Review [ 10005 ] | Reviewing [ 10301 ] |
Attachment | NotesFromSolving.jpg [ 14050 ] |
Attachment | IGB9.0.0.PNG [ 14051 ] |
Attachment | IGB9.0.1.PNG [ 14052 ] |
Status | Reviewing [ 10301 ] | Ready for Pull Request [ 10304 ] |
Assignee | Deepti Joshi [ djoshi4 ] | Ann Loraine [ aloraine ] |
Assignee | Ann Loraine [ aloraine ] | Ivory Clabaugh [ ieclabau ] |
Assignee | Ivory Blakley [ ieclabau ] | Ann Loraine [ aloraine ] |
Assignee | Ann Loraine [ aloraine ] | Ivory Blakley [ ieclabau ] |
Link | This issue relates to IGBF-1209 [ IGBF-1209 ] |
Status | Ready for Pull Request [ 10304 ] | Open [ 1 ] |
Status | Open [ 1 ] | In Progress [ 3 ] |
Status | In Progress [ 3 ] | Needs 1st Level Review [ 10005 ] |
Status | Needs 1st Level Review [ 10005 ] | Reviewing [ 10301 ] |
Assignee | Ivory Blakley [ ieclabau ] | Deepti Joshi [ djoshi4 ] |
Status | Reviewing [ 10301 ] | Ready for Pull Request [ 10304 ] |
Assignee | Deepti Joshi [ djoshi4 ] |
Status | Ready for Pull Request [ 10304 ] | In Progress [ 3 ] |
Assignee | Deepti Joshi [ djoshi4 ] |
Status | In Progress [ 3 ] | Ready for Pull Request [ 10304 ] |
Status | Ready for Pull Request [ 10304 ] | Needs 1st Level Review [ 10005 ] |
Assignee | Deepti Joshi [ djoshi4 ] |
Status | Needs 1st Level Review [ 10005 ] | In Progress [ 3 ] |
Assignee | Deepti Joshi [ djoshi4 ] |
Assignee | Deepti Joshi [ djoshi4 ] | Ivory Blakley [ ieclabau ] |
Attachment | isEditable.docx [ 14053 ] |
Assignee | Ivory Blakley [ ieclabau ] | Ann Loraine [ aloraine ] |
Status | In Progress [ 3 ] | Pull Request Submitted [ 10101 ] |
Status | Pull Request Submitted [ 10101 ] | Needs Testing [ 10002 ] |
Assignee | Ann Loraine [ aloraine ] | Mason Meyer [ mason ] |
Resolution | Done [ 10000 ] | |
Status | Needs Testing [ 10002 ] | Closed [ 6 ] |
Fix Version/s | 9.0.1 Minor Release [ 10500 ] |
Workflow | Loraine Lab Workflow [ 17885 ] | Fall 2019 Workflow Update [ 19834 ] |
Workflow | Fall 2019 Workflow Update [ 19834 ] | Revised Fall 2019 Workflow Update [ 21953 ] |
Resetting preferences removes duplicates.
reset prefs > open IGB 9.0.0 > no duplicates
reset prefs > open IGB 9.0.1 > no duplicates
reset prefs > open IGB 9.0.0 > open IGB 9.0.1 > see duplicates
Users may notice the duplicates and choose to reset prefs, but that's not ideal AND reseting prefs also looses any non-default quickload sites.