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  1. IGB
  2. IGBF-1206

Duplicate QL sites appear in new versions of IGB with changed default QL sites

        Details

        • Story Points:
          4
        • Sprint:
          B - Summer 2018

          Description

          IGB 9.0.1 contains updates to Quickload sites added by default to each session.
          However, if you start 9.0.1 after running 9.0.0, you will see what appear to be duplicate QL sites.

          To repeat:
          1) Start IGB 9.0.0
          2) Select File > Preferences > Data Sources
          3) Observe Quickload data sources loaded from IGB igb_preferences.json:

          • IGB Quickload
          • Pollen
          • Cytokinin
          • Blueberry

          4) Quit
          5) Start IGB 9.0.1
          6) Select File > Preferences > Data Sources
          7) Observe too many QL Data Sources

            Attachments

            1. IGB9.0.0.PNG
              IGB9.0.0.PNG
              99 kB
            2. IGB9.0.1.PNG
              IGB9.0.1.PNG
              142 kB
            3. isEditable.docx
              482 kB
            4. NotesFromSolving.jpg
              NotesFromSolving.jpg
              2.57 MB

              Issue Links

              relates to

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1200 remove pollen and cyto QL sites and add http://lorainelab-quickload.scidas.org/rnaseq RNA-Seq QL site

              • Major - Major loss of function.
              • Closed

              Bug - A problem which impairs or prevents the functions of the product. IGBF-1219 Load Priority should be updated from preferences

              • Major - Major loss of function.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-1195 Add soybean RNA-Seq quickload site to IGB

              • Major - Major loss of function.
              • Closed

              Improvement - An improvement or enhancement to an existing feature or task. IGBF-1403 Add DNA-Seq and ChIP-Seq Quickload sources

              • Major - Major loss of function.
              • Closed

                Activity

                Ascending order - Click to sort in descending order
                ann.loraine Ann Loraine created issue -
                ann.loraine Ann Loraine made changes -
                Field Original Value New Value
                Sprint A - Spring 2018 [ 48 ]
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Rank Ranked higher
                ann.loraine Ann Loraine made changes -
                Summary duplicate quickload data sources Remove non-identical quickload data sources upon re-installation
                ann.loraine Ann Loraine made changes -
                Description IGB 9.0.1 shows too many Quickload sites.

                This is likely due to preferences not being updated to reflect changes in default QL sites.                 		IGB 9.0.1 shows too many Quickload sites.

                To repeat:
                1) Start IGB 9.0.0
                2) Visit Arabidopsis thaliana June 2009 genome
                3) Observe Quickload data sources
                4) Reset preferences to defaults (IGB will quit)
                5) Start IGB 9.0.1
                6) Select Arabidopsis thaliana June 2009 geome
                7) Observe duplicate Quickload data sources

                This is likely due to preferences not being updated to reflect changes in default QL sites.

                Possible solutions:
                Investigate whether or not we can uniquely identify default QL sites. Can the name be used?
                Investigate preferences migration mechanisms for new IGB versions.
                ann.loraine Ann Loraine made changes -
                Summary Remove non-identical quickload data sources upon re-installation New versions of IGB with new QL sites inherit the old ones, plus duplicates
                ann.loraine Ann Loraine made changes -
                Description IGB 9.0.1 shows too many Quickload sites.

                To repeat:
                1) Start IGB 9.0.0
                2) Visit Arabidopsis thaliana June 2009 genome
                3) Observe Quickload data sources
                4) Reset preferences to defaults (IGB will quit)
                5) Start IGB 9.0.1
                6) Select Arabidopsis thaliana June 2009 geome
                7) Observe duplicate Quickload data sources

                This is likely due to preferences not being updated to reflect changes in default QL sites.

                Possible solutions:
                Investigate whether or not we can uniquely identify default QL sites. Can the name be used?
                Investigate preferences migration mechanisms for new IGB versions.
                		IGB 9.0.1 contains updates to Quickload sites added by default to each session.
                However, if you start 9.0.1 after running 9.0.0, you will see what appear to be duplicate QL sites.

                To repeat:
                1) Start IGB 9.0.0
                2) Visit Arabidopsis thaliana June 2009 genome
                3) Observe Quickload data sources
                4) Reset preferences to defaults (IGB will quit)
                5) Start IGB 9.0.1
                6) Select Arabidopsis thaliana June 2009 geome
                7) Observe duplicate Quickload data sources

                This is likely due to IGB preferences not being updated to reflect changes in default QL sites.

                Possible solutions:
                Investigate whether or not we can uniquely identify default QL sites. Can the name be used?
                Investigate preferences migration mechanisms for new IGB versions.
                ann.loraine Ann Loraine made changes -
                Summary New versions of IGB with new QL sites inherit the old ones, plus duplicates Duplicate QL sites appear in new versions of IGB with changed default QL sites
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-1200 [ IGBF-1200 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-1195 [ IGBF-1195 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Assignee Ivory Clabaugh [ ieclabau ]
                ann.loraine Ann Loraine made changes -
                Description IGB 9.0.1 contains updates to Quickload sites added by default to each session.
                However, if you start 9.0.1 after running 9.0.0, you will see what appear to be duplicate QL sites.

                To repeat:
                1) Start IGB 9.0.0
                2) Visit Arabidopsis thaliana June 2009 genome
                3) Observe Quickload data sources
                4) Reset preferences to defaults (IGB will quit)
                5) Start IGB 9.0.1
                6) Select Arabidopsis thaliana June 2009 geome
                7) Observe duplicate Quickload data sources

                This is likely due to IGB preferences not being updated to reflect changes in default QL sites.

                Possible solutions:
                Investigate whether or not we can uniquely identify default QL sites. Can the name be used?
                Investigate preferences migration mechanisms for new IGB versions.
                		IGB 9.0.1 contains updates to Quickload sites added by default to each session.
                However, if you start 9.0.1 after running 9.0.0, you will see what appear to be duplicate QL sites.

                To repeat:
                1) Start IGB 9.0.0
                2) Select File > Preferences > Data Sources
                3) Observe Quickload data sources loaded from IGB igb_preferences.json:

                * IGB Quickload
                * Pollen
                * Cytokinin
                * Blueberry

                4) Quit
                5) Start IGB 9.0.1
                6) Select File > Preferences > Data Sources
                7) Observe too many QL Data Sources


                djoshi4 Deepti Joshi (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Assignee Ivory Clabaugh [ ieclabau ] Deepti Joshi [ djoshi4 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Attachment NotesFromSolving.jpg [ 14050 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Attachment IGB9.0.0.PNG [ 14051 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Attachment IGB9.0.1.PNG [ 14052 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Status Reviewing [ 10301 ] Ready for Pull Request [ 10304 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Assignee Deepti Joshi [ djoshi4 ] Ann Loraine [ aloraine ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Assignee Ann Loraine [ aloraine ] Ivory Clabaugh [ ieclabau ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Assignee Ivory Blakley [ ieclabau ] Ann Loraine [ aloraine ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Assignee Ann Loraine [ aloraine ] Ivory Blakley [ ieclabau ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-1209 [ IGBF-1209 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status Ready for Pull Request [ 10304 ] Open [ 1 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status Open [ 1 ] In Progress [ 3 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status In Progress [ 3 ] Needs 1st Level Review [ 10005 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] Reviewing [ 10301 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Assignee Ivory Blakley [ ieclabau ] Deepti Joshi [ djoshi4 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Status Reviewing [ 10301 ] Ready for Pull Request [ 10304 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Assignee Deepti Joshi [ djoshi4 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Status Ready for Pull Request [ 10304 ] In Progress [ 3 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Assignee Deepti Joshi [ djoshi4 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Status In Progress [ 3 ] Ready for Pull Request [ 10304 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Status Ready for Pull Request [ 10304 ] Needs 1st Level Review [ 10005 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Assignee Deepti Joshi [ djoshi4 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Status Needs 1st Level Review [ 10005 ] In Progress [ 3 ]
                djoshi4 Deepti Joshi (Inactive) made changes -
                Assignee Deepti Joshi [ djoshi4 ]
                ann.loraine Ann Loraine made changes -
                Assignee Deepti Joshi [ djoshi4 ] Ivory Blakley [ ieclabau ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Attachment isEditable.docx [ 14053 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Assignee Ivory Blakley [ ieclabau ] Ann Loraine [ aloraine ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Status In Progress [ 3 ] Pull Request Submitted [ 10101 ]
                ann.loraine Ann Loraine made changes -
                Status Pull Request Submitted [ 10101 ] Needs Testing [ 10002 ]
                ann.loraine Ann Loraine made changes -
                Assignee Ann Loraine [ aloraine ] Mason Meyer [ mason ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Link This issue relates to IGBF-1219 [ IGBF-1219 ]
                mason Mason Meyer (Inactive) made changes -
                Resolution Done [ 10000 ]
                Status Needs Testing [ 10002 ] Closed [ 6 ]
                ieclabau Ivory Blakley (Inactive) made changes -
                Fix Version/s 9.0.1 Minor Release [ 10500 ]
                ann.loraine Ann Loraine made changes -
                Link This issue relates to IGBF-1403 [ IGBF-1403 ]
                ann.loraine Ann Loraine made changes -
                Workflow Loraine Lab Workflow [ 17885 ] Fall 2019 Workflow Update [ 19834 ]
                ann.loraine Ann Loraine made changes -
                Workflow Fall 2019 Workflow Update [ 19834 ] Revised Fall 2019 Workflow Update [ 21953 ]

                  People

                  • Assignee:
                    mason Mason Meyer (Inactive)
                    Reporter:
                    ann.loraine Ann Loraine
                  • Votes:
                    0 Vote for this issue
                    Watchers:
                    4 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: