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  1. IGB
  2. IGBF-1266

Create a bigbed file for Galaxy testing

        Details

        • Type: Bug
        • Status: Closed (View Workflow)
        • Priority: Major
        • Resolution: Done
        • Affects Version/s: None
        • Fix Version/s: None
        • Labels:
          None

          Description

          Find or create a bigbed file in the A. thaliana June 2009 genome.
          Send it to Ann to add to the Galaxy files for testing purposes.

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              Issue Links

              relates to

              Task - A task that needs to be done. IGBF-1246 Add detail to the Galaxy test instructions

              • Major - Major loss of function.
              • Closed

                Activity

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                5 older comments
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                ieclabau Ivory Blakley (Inactive) added a comment -

                I am reassigning to Ann to add these files to the Galaxy history for testing.

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                ieclabau Ivory Blakley (Inactive) added a comment - I am reassigning to Ann to add these files to the Galaxy history for testing.
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                ann.loraine Ann Loraine added a comment -

                uploaded to public Galaxy History "Open Galaxy files in Integrated Genome Browser"

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                ann.loraine Ann Loraine added a comment - uploaded to public Galaxy History "Open Galaxy files in Integrated Genome Browser"
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                ieclabau Ivory Blakley (Inactive) added a comment -

                For two of the files, the file genome ("database") is set to "Arabidopsis_thaliana_TAIR10", and they appear in IGB in the Arabidopsis genome.

                The wig file is set to "arabidopsis", so it appears in IGB in a custom genome, apart from any other data.

                I am reassigning to Ann to correct the genome attribute of the wig file.

                Show
                ieclabau Ivory Blakley (Inactive) added a comment - For two of the files, the file genome ("database") is set to "Arabidopsis_thaliana_TAIR10", and they appear in IGB in the Arabidopsis genome. The wig file is set to "arabidopsis", so it appears in IGB in a custom genome, apart from any other data. I am reassigning to Ann to correct the genome attribute of the wig file.
                Hide
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                ann.loraine Ann Loraine added a comment -

                All files now have Galaxy genome version set to "Arabidopsis thaliana TAIR10"

                Show
                ann.loraine Ann Loraine added a comment - All files now have Galaxy genome version set to "Arabidopsis thaliana TAIR10"
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                ieclabau Ivory Blakley (Inactive) added a comment -

                The wig files shows up in the right genome now.
                All files appear as they do when I load them from my local machine.

                I am marking this issue as complete.

                Show
                ieclabau Ivory Blakley (Inactive) added a comment - The wig files shows up in the right genome now. All files appear as they do when I load them from my local machine. I am marking this issue as complete.

                  People

                  • Assignee:
                    ieclabau Ivory Blakley (Inactive)
                    Reporter:
                    ieclabau Ivory Blakley (Inactive)
                  • Votes:
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                    Watchers:
                    2 Start watching this issue

                    Dates

                    • Created:
                      Updated:
                      Resolved: