Details
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Type: Task
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Status: Closed (View Workflow)
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Priority: Major
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Resolution: Done
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Affects Version/s: None
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Fix Version/s: None
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Labels:
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Story Points:1
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Sprint:Winter 2018 Sprint 3, Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3
Description
A user would like us to add green monkey (Chlorocebus sabaeus) to IGB Quickload.
We should get the sequence data (as usual) from UCSC but get the reference gene models from the GFF available from NCBI as he mentioned below. It would be more convenient to get the gene models from UCSC as usual, but I don't see them listed in the table browser. I think what may have happened is that NCBI has annotated the genome but UCSC has not yet imported the annotations into their database.
Attachments
Issue Links
Activity
genome sequence:
- url: http://hgdownload.cse.ucsc.edu/goldenPath/chlSab2/bigZips/
- file: chlSab2.2bit
Genome version name:
- C_sabeus_Mar_2014
synonyms:
- Chlorocebus_sabeus 1.1
- chlSab2
- Vervet Genomics Consortium GCA_000409795.2
Ivory Blakley (Inactive)
added a comment - - edited genome sequence:
url: http://hgdownload.cse.ucsc.edu/goldenPath/chlSab2/bigZips/
file: chlSab2.2bit
Genome version name:
C_sabeus_Mar_2014
synonyms:
Chlorocebus_sabeus 1.1
chlSab2
Vervet Genomics Consortium GCA_000409795.2
Resolved inconsistent behavior, tested in IGB, functions pass.