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  1. IGB
  2. IGBF-1523

Add vervet (green monkey) to IGB species.txt and synonyms.txt files

        Details

        • Story Points:
          0.25
        • Sprint:
          Spring 2019 Sprint 1, Spring 2019 Sprint 2, Spring 2019 Sprint 3

          Description

          Consult with Jill Jenkins on precise wording to use.

          We need to add green monkey to the species and synonyms files packaged with IGB. These files can also be distributed on a quickload site. Search Jira for examples of previously done updates.

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              relates to

              Task - A task that needs to be done. IGBF-1401 Add Chlorocebus sabaeus ("green monkey") to IGB quickload

              • Major - Major loss of function.
              • Closed

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                Jill Jill Jenkins (Inactive) added a comment -

                There are corresponding ens gene IDs for each ens transcript stable ID; however, not all ens gene IDs are showing in the tool tip. When I check them against the ensGene.bed14 file, they are present. I have re-executed the script and outcome is the same.

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                Jill Jill Jenkins (Inactive) added a comment - There are corresponding ens gene IDs for each ens transcript stable ID; however, not all ens gene IDs are showing in the tool tip. When I check them against the ensGene.bed14 file, they are present. I have re-executed the script and outcome is the same.
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                Jill Jill Jenkins (Inactive) added a comment -

                I attached the Py3 script as well.

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                Jill Jill Jenkins (Inactive) added a comment - I attached the Py3 script as well.
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                ptambvek Pranav Sanjay Tambvekar (Inactive) added a comment -

                Jill Jenkins, Can you please add the link to the branch in your fork, where you have made the related changes, so that we can proceed to the first review?

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                ptambvek Pranav Sanjay Tambvekar (Inactive) added a comment - Jill Jenkins , Can you please add the link to the branch in your fork, where you have made the related changes, so that we can proceed to the first review?
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                Jill Jill Jenkins (Inactive) added a comment -

                I apologize, Pranav - this comment was for actually adding the green monkey genome to Dropbox.

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                Jill Jill Jenkins (Inactive) added a comment - I apologize, Pranav - this comment was for actually adding the green monkey genome to Dropbox.
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                Jill Jill Jenkins (Inactive) added a comment - - edited

                C.sabeus has been added to the Dropbox species.txt - review this for wording for IGB package species.txt and synonyms.txt.

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                Jill Jill Jenkins (Inactive) added a comment - - edited C.sabeus has been added to the Dropbox species.txt - review this for wording for IGB package species.txt and synonyms.txt.

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                  • Assignee:
                    Unassigned
                    Reporter:
                    ann.loraine Ann Loraine
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                      Updated:
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